Micromonas commoda: MICPUN_56036
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Entry
MICPUN_56036 CDS
T02695
Name
(RefSeq) predicted protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Pathway
mis03013
Nucleocytoplasmic transport
mis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
MICPUN_56036
03015 mRNA surveillance pathway
MICPUN_56036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_56036
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_56036
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
MICPUN_56036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF285
AAA_22
Motif
Other DBs
NCBI-GeneID:
8240833
NCBI-ProteinID:
XP_002500119
JGI:
MicpuN3_56036
UniProt:
C1DY74
LinkDB
All DBs
Position
2:complement(join(1049093..1050438,1050577..1050700))
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AA seq
489 aa
AA seq
DB search
MSSEEAAAETKPEAETKPTEDVKTSEDVDKAAEALEKVGVAENEDVEKPDVPDTALGKSE
VLVEQEETVVEKKVVDDTPYASAKSFEELGLSAELLQGLYSEMKFERPSKIQGETLPMIL
QPPHRNLIAQAHNGSGKTTCFTLGMLSRVDVSNPAPQALCICPTRELAIQNVMVMEKMGK
YAKITIAYTADARWVGASRREKIVDQVVIGTPGKMLGWMREKQLDCKGVKILVFDEADQM
MDTDGHRVDSLKIMKHLKSSTKQMPQVLLFSATFNERVKDFSTKVVPNANQIFLPAHELS
LDVIKQHRVYVNSTEAKEILLKEKIFPCCDKIGQTIIFVRTREGCKRLMRTMNEAGYKCT
AIEGGMEHSERDRVVKEFRDGLTKILISTDVLSRGLDVSTVTLVINYDMPVEHSNPRAPN
YETYLHRIGRSGRFGKKGAAFNLLLGPDERAVMDKIAEHFDHPVPEVEFNDDDAFEHVLE
EAGLMSKEE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgaggaggccgccgccgagaccaagcccgaggctgagaccaagcccaccgaa
gacgtgaagacttcggaggacgtggacaaggccgcggaggcgctcgagaaggtcggcgtc
gccgagaatgaggatgtcgagaagcccgacgtgcccgacaccgccctcggcaagtccgaa
gtgctcgtggagcaggaggagaccgtggttgagaagaaagttgtggacgacaccccttac
gcctcggccaagtccttcgaggagctcggcctgagcgccgagctgctgcagggcctgtac
agcgagatgaagttcgagcggccgtcgaagatccagggagagacccttccgatgatcctc
cagcccccgcatcgcaacctcatcgcgcaggcgcacaacggatcgggcaagaccacctgc
ttcacgctggggatgctgtcgcgcgtggacgtgtccaaccccgcgccgcaggcgctgtgc
atatgccccacccgcgagctggccatccagaacgtcatggtcatggagaagatgggcaaa
tacgccaagatcaccatcgcgtacaccgcggacgccaggtgggtgggcgcgagcaggagg
gagaagattgtggaccaggtggtgatcgggacgccgggcaagatgctggggtggatgcgg
gagaagcagctggactgcaagggcgtcaagatcttggtcttcgacgaggcggatcagatg
atggacacggacgggcacagggtggactcgctcaagatcatgaagcacctcaagagcagc
accaagcagatgccgcaggttctgctcttctccgcgacgttcaacgagcgcgtcaaggac
ttcagcaccaaggtggtgccaaacgcgaaccagatcttcctcccggcgcacgaactgtcc
ctggatgtgatcaagcagcacagggtgtacgtcaacagcaccgaggcgaaggagatcttg
ctcaaggagaagatcttcccgtgctgcgacaaaatcggccagaccatcatcttcgtgcga
acgcgcgaggggtgcaagcgcctgatgcgcaccatgaacgaggccgggtacaagtgcacc
gcgatcgagggcggcatggagcacagcgagcgcgaccgcgtcgtgaaggagttccgcgac
ggcctcaccaagattctcatctccaccgacgtcctctcccgcggcttggacgtctccacc
gtgacgctcgtcatcaactacgacatgcccgtggagcacagcaacccgcgggcgcccaac
tacgagacctatctccaccgcatcggtaggtccggcaggttcggcaagaagggcgccgcg
ttcaacctcctgttgggaccggacgagcgggccgtcatggacaagatcgcggagcacttc
gaccacccggtgcccgaggtggagttcaacgacgacgacgctttcgagcacgtcctggag
gaggccggcctcatgagcaaggaggagtaa
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