Micromonas commoda: MICPUN_68288
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Entry
MICPUN_68288 CDS
T02695
Name
(RefSeq) predicted protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mis
Micromonas commoda
Pathway
mis03022
Basal transcription factors
mis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MICPUN_68288
09124 Replication and repair
03420 Nucleotide excision repair
MICPUN_68288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_68288
03400 DNA repair and recombination proteins [BR:
mis03400
]
MICPUN_68288
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MICPUN_68288
DNA repair and recombination proteins [BR:
mis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MICPUN_68288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
8244765
NCBI-ProteinID:
XP_002503474
JGI:
MicpuN3_68288
UniProt:
C1E9T2
LinkDB
All DBs
Position
7:join(246303..246794,246846..247019,247170..247380,247459..>247956)
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AA seq
458 aa
AA seq
DB search
MGSAFVGFLSDMSSRQINHLYQSPWACLSVLRSLPSLAKHYVMRLLYVDEGIAREEMDAW
VRPGKEHRDRHARSMLALKRLRVLVPAGDQEYVADGKELVRLNRRFVKGVRAQIETCFAP
EGDEVEATVAPDDAMGGKRPSPEKIEEFAKGRWEALLMTLTGRDRRKGPGLDVAALFRGA
GLVAEKSNKSNGWGITEKGFRFLLSTAREQIWTLLTEYVRQYSAPGDRTLVAPAVIGFML
RLTFQAVGQPYRVDDLPSAQRAIAEDLAHLGLLYLFAGPGKEGYYVPTQLTAGKDVADGD
ASLGGDPGGHIIAETNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVHEALD
TGVAAEQIIKYIKSHAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYCDFPT
GTDEYAAAVKAASDAGVLLWENREQMKLAVAKSGHERM
NT seq
1375 nt
NT seq
+upstream
nt +downstream
nt
atggggtcggcgttcgtcgggttcctctccgacatgagctcgcgacagatcaaccacctg
taccagtccccttgggcgtgcctctccgtcctccgctcgctcccatccttggccaagcac
tacgtcatgcggctgctgtacgtggacgagggcatcgcgagggaggagatggacgcgtgg
gtgcggcccgggaaagagcacagggatcgccacgcgcggtccatgctggcgctcaaacga
ctccgcgtcctcgttcccgcgggcgaccaggagtacgtcgccgacggcaaggagctcgtc
cggctgaaccgccgattcgtcaagggcgttcgcgcgcagatcgagacgtgcttcgccccg
gagggcgacgaggtggaggcgaccgtggcgcccgacgacgcgatggggggcaagcggcca
tcgcccgagaagatcgaggagttcgccaaggggcgatgggaggcactgctgatgacgctg
acggggcgcgacaggcggaaaggacccggactcgacgtcgccgcgctcttccgcggcgcg
ggcctcgtcgcggagaagtccaacaagtccaacgggtggggcatcacggaaaaagggttc
aggttcctcctgagcacggcgcgggagcagatatggactttgctgacggagtacgttcgg
cagtactcggcacccggggacaggaccctcgtcgcgcccgccgtcatcgggttcatgctc
cggctcacgttccaagccgtcggtcagccctaccgcgtcgacgacttgccgagcgcgcag
cgcgccatcgcggaggacctcgcgcacctcggcctgctctacctgttcgcgggtccgggg
aaggaggggtactacgttcccacccagctcaccgcggggaaggacgtcgcggatggcgac
gcgtccctcggcggggacccgggggggcacatcatcgccgagaccaactttcgcgtgtac
gcgtacacgttcagcgacgtcgagtgcgagattttgcgactcttcaccaggccggactac
aggctgccgaacctgtacgtgggtatgctgacgcgcgaggcggtgcacgaagcgctggac
acgggcgtcgccgcggagcagatcatcaagtacatcaaatcgcacgcgcatcccaacgcg
aggaagacgacgaacggctccgggatcccgccgaacgtggcggaccagatcatgctgtgg
gcgatggagcggcgcagggtgcggagcgcagagtgcgtgctctactgcgatttccccacg
ggcacggacgagtacgccgccgcggtgaaagccgcgagcgacgccggcgttttgctctgg
gagaatcgcgagcagatgaagctggcggtggcgaagagcgggcacgagcggatga
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