Mycobacterium intracellulare MOTT-02: OCO_09250
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Entry
OCO_09250 CDS
T01754
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCO_09250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_09250
Enzymes [BR:
mit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCO_09250
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCO_09250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFC47289
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All DBs
Position
908232..910511
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AA seq
759 aa
AA seq
DB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLATSAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLNQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFNDSAEKGEVI
VNLHGSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEG
KWDGYRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVP
NFHEMQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDG
REALEHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGI
GSLLMGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYV
RPELVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatcctttttcgagaagcaactcgccacgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgttggaggttcacgttccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccgggccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcggcctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgccccgctcgacgagccggtgagcagcaaaggcgccacggtgttggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaaaatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgaaccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaagacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaacaccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttcaatgactccgccgaaaaaggggaggtcatc
gtcaacctgcacggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgac
cagtggttggcacatcggatgaaggaccagaaggtcttcgagttcgacaccatcgcaccc
atgctggccacccacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggc
aaatgggacggttaccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcg
cgacgcggtcgcgaagtcacccaggaataccgcgaactgcgttggctggcagacgatctc
gccgaccatcacgtggtgctcgacggggaggctgtcgtcctggactcctccggggtgccc
aactttcacgagatgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgac
ctgctctacctcgacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactg
ctggaaatgttggccgccggcagcaggctcatcgtccccgacctactgcccggcgacggc
agggaggcgctggagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgc
gactccacctatcagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaac
acccaggaagtcgtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatc
ggctcactgctgatgggtatccccaccgcgggcggactgcacttcgccgggcgcgtcggc
accgggttcaccgaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacacc
gacgaatccccctttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtg
cggccggagctggtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgc
caatcgagttggcgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga
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