Microvirga sp. 17 mud 1-3: C4E04_07600
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Entry
C4E04_07600 CDS
T05470
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
miv
Microvirga sp. 17 mud 1-3
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C4E04_07600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miv03400
]
C4E04_07600
Enzymes [BR:
miv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C4E04_07600
DNA repair and recombination proteins [BR:
miv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C4E04_07600
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Ortholog
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GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWM86605
UniProt:
A0A2Z3II04
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Position
complement(1622505..1624097)
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AA seq
530 aa
AA seq
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MAKLATYRAKRDFTKTSEPKGAASRRQGSSFVIQKHDASRLHYDFRLELDGVLKSWAVTK
GPSLVPGEKRLAVEVEDHPLSYGDFEGTIPEGQYGGGTVMVWDRGTWTPEDDPHDGLAKG
RLSFRLDGEKLHGTWHLIRMGKRPREKQPSWLLNKGDDAFAREADDPDILEEAPSSVKTG
RSLDEIAGRDPKKASVKKRAPAKAASKTGSSKAGSTKTKSSSSSQKASSGAEVAGIALTH
PDRVLWEDQGLTKQQLAEFYVGIAEWLLPHLQNRPLTLIRCPSGAQKSCFVQRHPWAGLS
DAIHRESVRDESGEAELLAIRDIQGVVALVQSGVLEMHVWGATLADLEHPDRLIFDLDPG
EGVAWPDVVAGARAVRERLRGYGLESFAKTTGGKGLHVVAPLTPKAGWDAALTFTRSLAQ
AMAADEPERYTTTSVKQERAGRIFIDYLRNNREASAVAPYSTRARPGAPVSTPVSWEELA
KVEPNGFTVVNLNRRLARLKKDPWAEFAGIDQVLPDAPKAKRKRVRSEEP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctcgcgacctatcgcgccaagcgcgacttcaccaagacctccgagccgaag
ggagccgcctcccgtcggcaaggctcctccttcgtcatccagaagcacgacgcctcccgc
ctccattacgatttccgcctggagctggacggcgtcctgaagagctgggccgtcacgaag
gggccgagccttgtccccggcgagaagcgcctcgccgtcgaggtcgaggaccatcccctc
tcgtacggggatttcgagggcacgatcccggaaggtcagtacggaggcggaaccgtcatg
gtctgggaccggggcacctggacgccggaggacgacccgcatgatggcctcgccaagggc
cgcctcagcttccgcctggacggcgagaagcttcacggaacctggcacctgatccgcatg
ggcaagcgcccgcgcgagaagcagccctcgtggctcctcaataagggcgacgacgcgttc
gcgcgcgaagccgacgaccccgacattctcgaagaagccccctcgtccgtcaaaaccggc
cgctccctggacgagatcgcaggccgcgatccgaaaaaggcctctgtgaagaagagagcg
cccgcgaaggcagcttctaagactggttcgtccaaggccggctcaaccaagacgaaatcc
tcctcgtcgagccagaaggcctccagcggcgctgaggtcgccgggatcgcgctcacccac
cctgaccgggtcctgtgggaggatcaggggctcaccaagcaacagcttgcggagttctat
gtcggcatcgccgaatggctcctgccacatctacagaaccgtcccctcacgctgatccgc
tgcccctcgggtgcgcagaagagctgctttgtccagcgccatccctgggccggcctctcg
gacgccatccaccgcgagagcgtgcgggacgaatccggcgaggcggagctgctcgcgatc
cgtgacatccagggcgtcgtcgccctcgtgcaatccggcgtcctggagatgcatgtctgg
ggcgccaccctcgccgatctggagcatccggaccggctgatcttcgacctcgacccgggc
gaaggcgtcgcatggccggatgtggttgccggcgcccgtgcggtccgagagcgccttcgt
ggttacggcctcgagagcttcgccaagaccacgggcggcaagggcctgcatgtggtcgcg
cccctgacgccgaaggccggctgggacgcagccctgaccttcacccgcagcctcgcccag
gccatggcggcggacgagccggagcgctacaccaccacgtccgtgaagcaggaacgcgcg
ggacgcatcttcatcgattacctgcgcaacaaccgggaggcgtccgccgtcgcgccctac
tcgacccgcgcaaggcccggggcgccggtctcgaccccggtctcctgggaggagcttgcg
aaggtcgagcccaacggctttacggtcgttaatttgaaccggcgcctggcccgcctcaag
aaggacccctgggcggagtttgccggcatcgaccaggttcttcccgacgccccgaaggcg
aagaggaagcgcgtcagatcagaggagccttga
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