Methylocystis iwaonis: SS37A_14970
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Entry
SS37A_14970 CDS
T09113
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SS37A_14970 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miwa03400
]
SS37A_14970 (ligD)
Enzymes [BR:
miwa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SS37A_14970 (ligD)
DNA repair and recombination proteins [BR:
miwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SS37A_14970 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BDV33968
LinkDB
All DBs
Position
1585623..1588226
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AA seq
867 aa
AA seq
DB search
MPTRARKDDSALGAYRARRDFSVTPEPQGGVSHGGAPRLVVQRHFARREHFDLRLEMDGV
LKSWAVARGPSSDPADKRLAVRTEDHPLDYGDFEGLIPKGEYGGGTVMLWEDATFIPQNG
DPLEALEKGEIKFLAQGARMKGGWVLVRMKTRDKGENWLLIKERDEYADKEEDLAGRYVT
SVTTGRTREEIERGAKAKAASLATHTSPLRGGRRPKAAGWGPRSHDDVGAGPHPTPLRGA
TLPVKGRDKSPEIARSRAKSAYWSDKPIASAPTPKFIAPQLCETAEQPPSTGDWIFELKY
DGYRLELATGADGARVYTRTGLDWTERFSGLARAAFALPCRNALLDGEAVVFDEKGLSDF
AMLVSALEAGRSERVEFVAFDLLMLDEKDLRRESLRKRKEQLKELLSKSDGAIRYGDYIE
GDGRTVFAQATRAGAEGIIAKRADAPYRSGRFSDWLKIKGDFREDVLIVGYRPSEKGETF
ASLVAAKETPEGLRYVGRIGTGYDAATRRTLAPLLAKRAKKGSGPKLLAADKIPKGVVLI
ETPFPAEVRFGGWTMDGQLRQARFLGVREDMTPKAPAQQEPPKLSRITHASRVVFPADGI
TKGEIAAYYDAVAPRMAPHLADRPISLLRAPETVEELFFQRHPLKGMSKGILTVENEDEP
YIALDGALGLHTAAQFGAIEIHGWMSLASDLDRPDRMVFDLDPDEDLPFRGTCKAAADIR
DYLKAIGLSSWPLLTGGKGIHIVLPLDRSLTYADTEVFAAGFARGLARQEPQRFVATMSK
RRRAGRIFIDWLRNKKTATAILPWSLRARPGATVAAPLSWKTLAAADSASDYDIKSALGL
KDEWRGFFETRQTIAPGALSFMKTNGG
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcgcgccaggaaagacgatagcgcgctcggcgcctatcgcgccaggcgcgat
ttctcggtcacgccggagccgcagggaggggtttcgcatggcggcgcgccccgtctcgtg
gtgcaacggcatttcgcgcggcgcgagcatttcgaccttcggctcgaaatggatggcgtg
ttgaagagctgggccgtcgcgcgcggcccgtcgtctgacccggccgacaagcgtctggct
gtccgcaccgaggatcatccgctcgattacggcgatttcgaaggcttgatccccaagggc
gaatatggcggcgggacggtgatgctgtgggaggacgcgacttttataccgcagaatggc
gatccgctcgaggcgttggagaagggggaaatcaagttcctggcccagggcgcgcgcatg
aagggcggctgggttctggtgcgtatgaagacgcgcgacaaaggggaaaactggctcctg
ataaaggagcgggacgaatacgccgacaaggaggaggacctcgccgggcgatatgtgacg
agcgtcacgaccggccgcacgcgcgaggagatcgagcggggggcgaaagcgaaagctgcg
tcgttagccacccatacctcccctttacggggaggtcggcggccgaaggccgccgggtgg
ggcccgcgcagccacgacgatgttggggccggaccccacccgaccccgcttcgcggggcc
accctccccgtaaaggggagggataagagccccgagattgctcgatcacgggcgaagtct
gcctattggtcggataagcccatcgcctccgcgccgacgccgaaattcatcgcgccgcaa
ctctgtgaaacggccgaacagcccccctccacaggcgactggattttcgaactgaaatac
gacgggtaccgcctggagcttgcgaccggtgccgacggcgcgcgcgtttatacgcgcacg
gggctcgactggacggagcgcttttccggtctcgcgcgcgcggctttcgcgctcccctgc
cgcaatgcgcttctcgacggcgaggcggttgtcttcgacgagaaggggctctctgatttc
gccatgctggtctcggcgctggaagccgggcgcagtgagcgcgtggagttcgtcgctttc
gatctgctgatgcttgatgagaaggatctgcgccgcgagtcgctgcgcaagcgcaaggag
cagctcaaagagcttctttccaaaagcgacggcgccattcgctatggcgattatatcgaa
ggcgacgggcggacggtctttgcgcaggccacacgcgcgggcgcagaagggatcatcgcc
aagcgcgccgatgcgccctatcgcagcgggcgcttttcggattggctgaagatcaagggc
gactttcgcgaagacgtgctgattgtgggctaccgcccttccgagaagggcgagacattc
gcctcgctcgtcgccgcgaaagaaacgccggagggcctgcgttatgtgggacgcatcggg
acgggctatgacgcggccacaaggcgcacgctcgcgcctttattggcaaagcgcgcgaaa
aaggggagcgggccgaagctccttgcggcggacaagattccaaagggcgtcgtcctcatc
gaaacgccctttccggcggaagtgcgcttcggcggctggaccatggatgggcaattgcgg
caggcgcgctttctcggcgtgcgcgaagacatgacgccgaaagcgcccgcgcaacaggag
ccgccgaagctctcgcgcatcacccatgcgagccgcgtcgtctttcccgccgatgggatc
accaagggcgagatcgccgcctattacgacgccgttgcgccgcgcatggcgccccatctc
gccgatcggccgatcagcctgttgcgcgcgccggagacggtcgaggagctgttcttccag
cgccatccgttgaaagggatgagcaagggcattctgaccgtcgagaatgaagacgagccc
tatatcgcgctcgatggcgcgcttggcttgcacacggcggcgcaattcggcgccattgaa
attcacggctggatgtcgcttgcaagcgatctcgaccgcccggaccggatggttttcgat
ctcgatccggacgaggatttgccgttccgcggcacctgcaaggccgccgccgatattcgc
gattatctgaaggcgatcggcctctcatcctggccgctgctgacaggcggcaaggggatt
catatcgtgctgccgctcgaccgttcgctcacttacgcggatacggaagtgttcgcggcg
ggcttcgcgcgcgggctggcgcgacaggagccgcaacgcttcgtcgcgacgatgagcaag
cggcgccgggccgggcgcatcttcatcgattggctgcgcaacaaaaaaacggcgacggcg
atcctgccatggtcactgcgcgcccgacccggcgcgacggtggcggcgcctttgtcatgg
aagacgctggccgccgccgatagcgccagcgattacgacatcaaaagcgcgcttggcttg
aaggatgagtggcgcgggttctttgagacgcgccagaccattgcgcctggggcgttgagt
tttatgaagacgaatggcggctga
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