Microbacterium sp. XT11: AB663_003164
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Entry
AB663_003164 CDS
T04243
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mix
Microbacterium sp. XT11
Brite
KEGG Orthology (KO) [BR:
mix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB663_003164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mix03400
]
AB663_003164
Enzymes [BR:
mix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB663_003164
DNA repair and recombination proteins [BR:
mix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB663_003164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALX67286
LinkDB
All DBs
Position
3226693..3229095
Genome browser
AA seq
800 aa
AA seq
DB search
MPADAHMVQIGGRRLRVTNLQKVVYPETGTTKGEIIAYYTQVAPALLPLLAGRPVTRKRW
VDGVGTADAPAEAFFTKQLERGAPSWIPRQEIRHSDGPKEYPLVEDVPTLVWLAQVAAIE
LHVPQWRFTPDGLPGNPDRLVLDLDPGPGVGLAQCAEVARIARGILTGMGLDPFPVTSGS
KGIHLYAALPGAQTSDEISAVVKELARLIENDHPDLATSTMAKVARGGKVFLDWSQNNGK
KTTISPYSLRGRSRPWVAAPRTWDELEDPDLRHLEMAEVLERLAAGADPIADLRPRGDEL
LAAYRAKRDADRTPEPMPERVASVSTGLTRRFVIQEHHARRLHYDLRIEDKGVLVSWAVP
KGVPESTERNHLAVMTEPHPLEYLTFSGTIPAGEYGAGEMSIWDTGTVALEKWRDDEVIG
TFTGREGGPLPGVRLALIRTTGEGEKSSWLLHRMKDGTEPRRKGAPRAAPERQPADRSTV
APLDPMLAENGTPALARALGSPAWVEVKWDGIRAIGSWEDGRMRLHARSGTDITARYPEL
TADGAPHLPVGDAVLDGEIVAFDTRGRPSFSLLQNRMHLTRPREIEREAVRTPTVYLVFD
LLRLDGHDLTSMPLAQRRTLLEDVVADLEAPVQAPPVFDDVDAALAASREFGLEGVVVKG
RESRYRPGQRSPSWLKVKNTRMQEAVIVGIRPGKGDRAGTIGSLLLAVPDTDGLRYIGRV
GTGFTDRMLRDLDRQLTPLRVPRAPLSGVPRPDAADALWVRPDLVGEVEFANWTPDGILR
HARWRGLRPDKAPDEVTVEA
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagacgcgcacatggtccagatcggcggacgacgcctgcgcgtcacgaatctg
cagaaggtcgtctaccccgagaccgggacgaccaagggcgagatcatcgcgtactacacg
caggtcgcccccgcgctcctcccgctgctggccgggcgccctgtcacgcgcaagcgctgg
gtggacggcgtcggcacagcggatgctccggccgaagcgttcttcacgaagcagctcgag
cggggtgcaccctcgtggatcccgcggcaggagatcaggcactcggacggaccgaaggag
tatccgctcgtggaggacgtgccgacgctcgtctggctcgcccaggtcgcggcgatcgag
ctccacgtgccgcagtggcggttcactcccgacgggctgcccggaaatccggaccgcctc
gtcctggatctcgaccccggccccggcgtcggactcgcccagtgcgcggaggtcgcgcgg
atcgcacgcggcatcctcaccggcatgggcctggatcccttccctgtgacgagcgggagc
aagggcatccacctctatgccgccctccccggtgcgcagaccagcgacgagatctccgcc
gtggtgaaggagctcgcgcggctcatcgagaacgaccatcccgatctcgccacgagcacc
atggccaaggtcgcccgcggcggcaaggtgttcctcgactggagccagaacaacggcaag
aagacgaccatctccccgtactcgctgcgcgggcggtcccgcccctgggtggccgcgccg
cgcacatgggacgagctcgaggaccccgacctgcgccacctggagatggcggaggtcctg
gagcgcctggccgcaggagccgacccgatcgcggatctgcgcccgcgcggcgacgagctc
ctggccgcgtaccgcgccaagcgcgacgccgaccgcactcccgagccgatgccggagcgg
gtggcatccgtgagcaccggcctgacgcggcgcttcgtcatccaggagcaccacgcgcgg
cggctgcactacgacctgcgcatcgaggacaagggcgtgctggtgagctgggcggtgccg
aagggcgtgcccgaatcgaccgagcgcaaccacctcgccgtgatgaccgaaccgcatccg
ctcgagtacctcaccttctccggcaccatccccgccggcgagtacggggcgggagagatg
tccatctgggacaccgggaccgtcgcactcgagaagtggcgagacgacgaggtgatcggc
accttcactgggcgcgagggagggccgcttcccggtgtgcgcctcgccctcatccgcacg
acgggcgagggcgagaagtcgtcgtggctgctgcaccggatgaaggacggaaccgagccg
cgccgcaagggggcgcctcgagcggcaccggagaggcagcccgcggacaggagcacggtg
gcgcctctcgatcccatgctcgccgagaacggcacgcccgcgctcgcgcgagccctcgga
tcgcccgcatgggtggaggtgaagtgggacggcatccgcgccatcggcagctgggaggac
ggacggatgcggctgcacgcccgcagcggcaccgacatcacggctcgctaccccgagctc
accgccgacggcgcgccgcacctccccgtcggcgacgccgtgctcgacggggagatcgtg
gcgttcgacacccgggggcgccccagcttctcgctgctgcagaaccggatgcacctcacc
aggccgcgcgagatcgagcgcgaggcagtgcggacgccgaccgtgtacctggtcttcgac
ctgctgcggctcgacggtcacgatctgacctccatgccgctcgctcagcgtcgcacgctt
ctcgaggatgtggtcgcggaccttgaggcgccggtgcaggccccgcccgtgttcgacgac
gtcgacgccgccctcgccgccagccgggagttcggtttggaaggcgtggtcgtcaagggc
cgcgagtcgcggtaccgcccaggccagcgctcaccatcgtggctcaaggtcaagaacacg
cgcatgcaggaggccgtgatcgtcggcatccgcccgggcaagggcgaccgcgccggcacg
atcggctcccttctcctcgccgtgcccgacaccgacggcctccggtacatcggccgcgtc
ggcaccgggttcaccgaccggatgctgcgcgacctggatcgtcagctcacccctctgcgc
gtgccacgcgcgccgctcagcggagtcccgcgcccggatgccgccgatgcactgtgggtg
cgacccgatctcgtcggcgaggtggagttcgcgaactggacgcccgacgggatcctacgg
cacgcacggtggcgagggctgcgcccggacaaggctcccgacgaggtcaccgtcgaggca
tga
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