Mycobacteroides immunogenum: BAB75_05505
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Entry
BAB75_05505 CDS
T04755
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
miz
Mycobacteroides immunogenum
Pathway
miz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
miz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAB75_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miz03400
]
BAB75_05505
Enzymes [BR:
miz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAB75_05505
DNA repair and recombination proteins [BR:
miz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAB75_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
ANO02919
UniProt:
A0A7V8RV35
LinkDB
All DBs
Position
1106744..1109083
Genome browser
AA seq
779 aa
AA seq
DB search
MERISPVWPTGAAESATSGPGATAFVRLSNAEKVLYPARGAAAATTKADVFGYYTAIAPF
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLAASAPEWLPRRRIEHKSRYVTYPLIDTSVAL
AWIAQQAALEVHVPQWRFVGENPGPATRLVFDLDPGEGVTMPQLALVARAVRDVLADIGL
TTFPLTSGSKGLHLYVPLAQPVSSSGAVAVAKKVAVQLEQTMPDLVTATMTRQLRAGKIF
VDWSQNSGSKTTVAPYSLRGRETPTVAAPRTWEELDDPALRQLRYDEVLTRAERDGDLLA
GLDDAEVSGDRLSVYRSMRDPARTPEPVPAVKPEAGQDNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPLEPAVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGEVTIWDSGTYDTE
KFIDPHDDDEAKGEVIVTLHGRRITGRYALIRTNGKQWLAHRMKDQRSAASMPVGAAPML
PTAGSVAGLDADEWAFEGKWDGYRLILECDRGQLRALARSGRDVTAEFPALRRLAHELAD
HRVVLDGEVVVLDHKGLPSFALLQNRTAGTDTEFWAFDLLYLDGKSLLRTKYRDRRRLLE
VLGSGTESMTVPDLLSGDGVAALAYSHDHGWEGVVAKRLDSTYGPGRTRSWIKAKNWSSQ
EVVIGGWRKGQGGRSSGIGALLMGIPFQDGLRYAGRVGTGFTEKELAALKERLEPLHRAE
SPFSAELSAVEAKDVQFVEPVLVAEVRYGDRTPGGILKHSSWRGLRPDKSVRDVELDLG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcatatccccagtatggcccaccggagccgcggagtcggcgacatccggcccg
ggggcgaccgcgttcgtccgactgtccaatgcggagaaagtgctgtatccggccaggggt
gccgccgcggccaccaccaaggcggatgtcttcggctactacaccgcgatcgcacctttc
atgctgccgcacatcgcgggtcgtccggtgacccgcaagcgatggcccaacggcgttgat
cagccatccttcttcgagaaggacttggccgcttcggcgcccgagtggcttccgcgacgg
cgcatcgagcacaagtcccgctatgtcacctacccgctgatcgatacctcggtggccctg
gcgtggatcgcgcagcaggcggcccttgaggtgcacgtgccacagtggcggttcgtaggt
gaaaatccgggtccggcaacccgattggtcttcgacctggatccgggggagggtgtgacc
atgccgcagctggcgctggtcgccagggccgtacgcgatgtgctcgccgatattggcctg
acgacgtttcccttgaccagcgggagtaagggtctgcacctgtatgtgccgctggcgcaa
ccggtcagctcatccggtgcggtggccgtggcgaagaaggtcgccgttcagctggagcag
accatgcccgacttggtgactgccaccatgacccgacagctgcgcgcgggcaagattttt
gtggactggagccagaacagcggttccaagacgacggtggctccgtactcgctgcgcggc
cgtgagacgccgaccgtcgccgcgccgcgcacgtgggaagagctggatgaccccgcgttg
cgccagttgcgttacgacgaagtgctgacgcgggccgagcgtgacggcgatctgctggcg
ggcctcgacgacgcggaggtctccggggacaggctgtctgtctaccgcagcatgcgtgac
cccgcgcgcacgccagaacccgtcccggcagtgaaaccggaagccggacaggataattca
tttgtcattcaggagcatcacgccaccgcgctgcactatgactttcggctggagcgtgat
ggtgtgctggtctcgtgggcggtgcccaagaatctgcccctggagccggcggtcaaccat
ctcgcggtgcacaccgaggaccacccgctggagtacgggggtttcgaaggcgtcatcccg
aagggcgagtatggggccggtgaggtgaccatctgggactcgggtacctacgacaccgag
aagttcatcgatccgcacgacgatgacgaagccaaaggtgaggtcatcgtcacgctgcac
ggtcggcgaatcacgggacggtacgcgctgattcgaacgaacggcaagcagtggctggcg
caccggatgaaggatcagcgatctgctgcctcgatgcccgtcggcgccgcgccgatgcta
ccgaccgctggatcggtggcgggccttgatgccgatgaatgggcgtttgaaggcaagtgg
gacggctaccggctcattctggagtgcgaccgcggacagctgagagcgctggcgcgcagt
gggcgcgacgtgaccgccgaattcccggcactgcggcgacttgcccacgaattggccgac
catcgcgtggtgctcgacggggaagtggtggtgcttgatcacaagggcctacccagcttt
gcgctgctacaaaatcggaccgcgggcacagacacagagttctgggcgttcgatctgctg
tatttggacggaaagtccttgctgcgcaccaagtatcgcgaccgtcgccggctgcttgag
gtgctggggtctggtaccgaatcgatgacagttccggatctactgtccggcgacggcgtc
gcggctctcgcgtactcgcatgaccacggttgggaaggggtggtcgccaagaggctcgac
tccacctatggacctggccgcacgcggtcctggatcaaggcgaagaactggagcagccaa
gaggtcgtcatcggtggctggcgcaaggggcagggtgggcgcagtagcggaataggggca
ctgctcatggggataccgttccaggacggactgcgctacgccgggcgggtgggcaccggt
ttcacggagaaggaactcgccgcgctcaaggaacgattggagccgctgcaccgcgccgaa
tcgcccttcagcgcagagctgtccgcggtcgaggccaaggacgtgcagttcgtcgagccg
gtactggtcgccgaggtccgctacggcgatcgcacgcccggcggaatcctgaagcactcc
agctggcgtggtctgcgccccgacaagtcagttcgcgacgtcgagctcgatctcgggtag
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