Mycobacterium sp. JLS: Mjls_4732
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Entry
Mjls_4732 CDS
T00482
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD ligase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mjl
Mycobacterium sp. JLS
Pathway
mjl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mjl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mjls_4732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjl03400
]
Mjls_4732
Enzymes [BR:
mjl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mjls_4732
DNA repair and recombination proteins [BR:
mjl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mjls_4732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABO00498
UniProt:
A0A5Q5CMG3
LinkDB
All DBs
Position
complement(4978971..4981247)
Genome browser
AA seq
758 aa
AA seq
DB search
MVDHFGRVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGEL
EFFEKQLASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGSG
GDLTPGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITGIGLTAYPLTSGSKGLHLYVPL
QEPISSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSL
RGREHPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSM
RDPSRTPEPVPPRPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSE
NHLAVHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVII
TLHGNRIDGRYALIQTDGKNWLAHRMKDQGTPTFEDFAPMLATHGSVEKLTAKQWAFEGK
WDGYRLLVDADHGKLCLKSRSGRDVTSEYPQLRALAADLADHHVVLDGEVVALDDKGVPS
FGHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGL
EALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIG
ALVLGIPGPDGLQFVGRVGTGFTEKQLGSLKKTLAPLHTDESPFATRLPTQDATGVTFVR
PELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcacttcggtcgggtgcgcctgaccaacccggacaaggtgctgtacccagcg
acgggcaccaccaaggccgaggtgttcgagtactacgtcgacgtggccgaggcgatggtg
ccgcacatcgccggccgggccgtcacccgtaagcgctggcccaacggcgtcggcgagctg
gagttcttcgagaagcagctggccagctccgcacccgactggctcgcgcgcggcacgatc
gtgcacaaatccggcaccaccacctacccgatcatcgacacccgcgaaggtctggcgtgg
atcgcgcagcaggccgcgctggaggtgcacgtgccgcagtggcggttcgtcggatcgggt
ggcgacttgactcccggcccggccacccgcatcgtgttcgacctcgaccccggcgagggc
gtcacgttccgtcagctgtgcgaggtcgcgcacgaggtccgcgacctgatcaccggcatc
gggctgacggcctatccgctgaccagcggcagcaagggtctgcacctctacgtcccgctc
caggagccgatcagctcccagggcgcgtcggtgctcgccaaacgcgtcgcccaacagctc
gagaaggccatgcccaaacaggtcaccgccacgatgaccaagagcctgcgcgagggcaag
gtgttcctcgactggagccagaacaacggcaacaagaccacgatcgcgccgtactccctg
cgcggccgcgagcatccaacggttgcggcgccgcgcacctgggaggagatcgaggacccc
gacctgagacatctgcgattcgacgaagtgctcgagcggatcgaggagttcggggacctg
ctggccgatctcgacgagtacgtgcctgtcgaggaccggctcaccaagtaccgcagcatg
cgcgacccgtcgaggacgccggagcccgtgccgccgcgaccgccgaaggccggcaacaac
gaccgcttcgtgatccaggaacaccatgcccggcggctgcactacgacctgcgtctggaa
cgcgacggtgtgctggtcagctgggcggtgccgaagaacctgcccgaccggccctcggaa
aaccacctcgccgtgcacaccgaggaccatccgatggagtacctcaccttccacggcacc
atcccgaagggtgagtacggcggcggcgacatgatcgtctgggacaccggcacgtatgag
accgagaagttcaacgaccacgccccggacggacccgccaagggcggggaggtcatcatc
accctgcacggcaacaggatcgacggccgttacgcactgatccagaccgacggcaagaac
tggctcgcccaccggatgaaggatcagggcaccccgacgttcgaggacttcgcgccgatg
ctggccacccacggctcggtcgagaagctcacggcgaaacagtgggcgttcgaaggcaag
tgggacggctaccggctgctggtcgacgccgaccatggcaagctgtgcctgaagtcccgt
agcggccgcgacgtcacctcagaatatccccaattacgcgcgctggcagcagatctcgcc
gaccaccatgtcgtgctcgacggggaggtcgtcgccctcgatgacaagggcgtgccgagc
ttcggccatatgcagaaccgggcccggtccacccgtgtcgagttctgggcgttcgacatc
ctgcgcctcgacggccgttggctgctgaaggcgaagtaccgagaccgccgaaagctgttg
gagacgttggccagtgggggcggactgatcgtgcaacccctgctcgacggcgacggcctc
gaggcgctcgaggacgcccgcaaacgcaggtgggagggtgttgtcgccaagaaatgggat
tccacctatcagccggggcggcgctcgtcggcgtggatcaaggacaaactgtggaacacc
caggaggtcgtgatcggcggctggcgcgaaggcaatggcggccgcagcagcggcatcggc
gcgctggtgctcggcatccccggacccgacggcctgcagttcgtcggccgggtcggcacc
gggttcaccgagaagcaactcggcagtctcaagaagacgttggcgccgctgcacaccgac
gaatcccccttcgcgacaaggcttcccacccaggacgccacgggcgtgacgttcgtgcgg
cccgaactcgtcggcgaggtgcgctacagcgagcgcaccggcgacggccggttgcgccaa
ccgtcctggcgggggctgcgaccggacaagacgccggacgacgtcgtgtgggagtag
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