KEGG   Mesorhizobium jarvisii: EB229_03985
Entry
EB229_03985       CDS       T06715                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mjr  Mesorhizobium jarvisii
Pathway
mjr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mjr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EB229_03985 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mjr03400]
    EB229_03985 (ligD)
Enzymes [BR:mjr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EB229_03985 (ligD)
DNA repair and recombination proteins [BR:mjr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EB229_03985 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QKC61562
UniProt: A0A6M7T9Z4
LinkDB
Position
826715..829204
AA seq 829 aa
MAGLEQYHAKRDFKKTSEPAGKVARTKKSEAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAQA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKEKPESVK
SGLTIEEVGEGKTAKGKKPEVWHSNKPAAGKAKAASRKLDFIEPQLATLERNAPPGKDWL
HEVKFDGYRMQAQIAGTEVRLLTRTGLDWTDKFGSEIIAELAALKCSDAILDGEIVVLAD
SGVSSFALLQQDLSAKRKNRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQSENAA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSAKGAIALKNKLDALKAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATGKAKPASS
GGGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLKQLAEADPWVDFFKQGKVLKRG
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaaaacgtcggagccggcg
ggcaaggtcgcacgcacgaaaaagagcgaagcgggcggaatcttcgttatccacaagcac
gctgcgaccaggctgcattacgatcttcgcctcgagcatggcggcgtgctgtggagctgg
gccgtgacgcgagggccgagccttgatccgcacgaaaagcggctcgccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgagggaacatgggtacccgagaccgacccggctcaggcg
atgaagaagggccatatcagcttcgaactcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaaaccccgcgcgggcgaaaagcgcgacaactggctgctgatcaagtcg
gacgacgccgcggcgcggccgggcgaggacattttgaaggagaagccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggtgaaggcaagaccgccaagggtaagaagcctgaa
gtctggcactccaacaagccggccgccggcaaggcgaaggccgcaagccgcaaactcgat
ttcatcgagccgcaactggcgacgctggagcggaacgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcagatcgccggcacggaagtgcgg
ctcttgacccgcaccggcctcgactggaccgacaagtttgggagcgagatcatcgcggaa
ctggccgcgctgaaatgcagcgacgccatcctcgacggcgagatcgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatctgtcggcgaagcggaagaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggaactgctcggcaagcagtcggaaaatgcggcg
gtgcgtttctccgaccatttctttgaacctggcaagatcatgctggagcatgcctgccgc
atggggctggaaggcgtcgtctcaaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaggaattcgtcatcggcggctatctg
ccgtcggacaagaccgggcgcgggctgcgctcgctgctggtcggctattacgagggcggc
aaactgcagtatgccggtcgtgtcggcaccggcttctcggccaagggcgctatcgcgctg
aagaacaagctcgatgcgctgaaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaaggggctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtataatacgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaaggccaagccggcctcgagc
ggcggcgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctatggccc
gacgagaagatctccaagcagggcctgctcgaccattacgccgaggtttggccgcgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccaaaaacatgcctcggccggcatgagcgacagaatagcccggatgaaa
gacccgacggatggcgaggaaatcctgttcgtgcgagatttcgacggggtggcggcgctc
gtccagtacggcgtggtcgaaatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgaccccgatgaaggtgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatatcaggggcaagctcgacgagctgtcgctgccaaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcagcggactgggag
gcggtgaagaccttcgcccatgatttcgccaaggcgctcgaacagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcgcaccgggaaaatcttcgtcgactatctgcgc
aatggcaggggctcgacaacggtcgcgccgtattcctcgcgcgccaagaagggcgccacc
gtatcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaacgctttcccc
ataggcgacaagacgacgctgaagcagttggcggaagccgatccttgggtggatttcttc
aagcagggcaaggtgttgaagcgggggtag

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