Mesorhizobium jarvisii: EB229_03985
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Entry
EB229_03985 CDS
T06715
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mjr
Mesorhizobium jarvisii
Pathway
mjr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EB229_03985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjr03400
]
EB229_03985 (ligD)
Enzymes [BR:
mjr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EB229_03985 (ligD)
DNA repair and recombination proteins [BR:
mjr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EB229_03985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QKC61562
UniProt:
A0A6M7T9Z4
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All DBs
Position
826715..829204
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AA seq
829 aa
AA seq
DB search
MAGLEQYHAKRDFKKTSEPAGKVARTKKSEAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAQA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKEKPESVK
SGLTIEEVGEGKTAKGKKPEVWHSNKPAAGKAKAASRKLDFIEPQLATLERNAPPGKDWL
HEVKFDGYRMQAQIAGTEVRLLTRTGLDWTDKFGSEIIAELAALKCSDAILDGEIVVLAD
SGVSSFALLQQDLSAKRKNRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQSENAA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSAKGAIALKNKLDALKAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATGKAKPASS
GGGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLKQLAEADPWVDFFKQGKVLKRG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaaaacgtcggagccggcg
ggcaaggtcgcacgcacgaaaaagagcgaagcgggcggaatcttcgttatccacaagcac
gctgcgaccaggctgcattacgatcttcgcctcgagcatggcggcgtgctgtggagctgg
gccgtgacgcgagggccgagccttgatccgcacgaaaagcggctcgccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgagggaacatgggtacccgagaccgacccggctcaggcg
atgaagaagggccatatcagcttcgaactcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaaaccccgcgcgggcgaaaagcgcgacaactggctgctgatcaagtcg
gacgacgccgcggcgcggccgggcgaggacattttgaaggagaagccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggtgaaggcaagaccgccaagggtaagaagcctgaa
gtctggcactccaacaagccggccgccggcaaggcgaaggccgcaagccgcaaactcgat
ttcatcgagccgcaactggcgacgctggagcggaacgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcagatcgccggcacggaagtgcgg
ctcttgacccgcaccggcctcgactggaccgacaagtttgggagcgagatcatcgcggaa
ctggccgcgctgaaatgcagcgacgccatcctcgacggcgagatcgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatctgtcggcgaagcggaagaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggaactgctcggcaagcagtcggaaaatgcggcg
gtgcgtttctccgaccatttctttgaacctggcaagatcatgctggagcatgcctgccgc
atggggctggaaggcgtcgtctcaaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaggaattcgtcatcggcggctatctg
ccgtcggacaagaccgggcgcgggctgcgctcgctgctggtcggctattacgagggcggc
aaactgcagtatgccggtcgtgtcggcaccggcttctcggccaagggcgctatcgcgctg
aagaacaagctcgatgcgctgaaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaaggggctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtataatacgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaaggccaagccggcctcgagc
ggcggcgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctatggccc
gacgagaagatctccaagcagggcctgctcgaccattacgccgaggtttggccgcgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccaaaaacatgcctcggccggcatgagcgacagaatagcccggatgaaa
gacccgacggatggcgaggaaatcctgttcgtgcgagatttcgacggggtggcggcgctc
gtccagtacggcgtggtcgaaatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgaccccgatgaaggtgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatatcaggggcaagctcgacgagctgtcgctgccaaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcagcggactgggag
gcggtgaagaccttcgcccatgatttcgccaaggcgctcgaacagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcgcaccgggaaaatcttcgtcgactatctgcgc
aatggcaggggctcgacaacggtcgcgccgtattcctcgcgcgccaagaagggcgccacc
gtatcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaacgctttcccc
ataggcgacaagacgacgctgaagcagttggcggaagccgatccttgggtggatttcttc
aagcagggcaaggtgttgaagcgggggtag
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