Maniola jurtina (meadow brown): 123874515
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Entry
123874515 CDS
T09254
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03013
Nucleocytoplasmic transport
mju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123874515
03015 mRNA surveillance pathway
123874515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123874515
Enzymes [BR:
mju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123874515
5.6.2.5 RNA 5'-3' helicase
123874515
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123874515
mRNA cycle factors
Common to processing body (P body) and stress granule
123874515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
AAA_16
Helicase_RecD
SRP54
AAA_22
nSTAND3
UvrD_C_2
AAA_5
Motif
Other DBs
NCBI-GeneID:
123874515
NCBI-ProteinID:
XP_045775873
EnsemblRapid:
ENSMJUG00000009172
LinkDB
All DBs
Position
18:7606946..7615400
Genome browser
AA seq
1035 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEEADLIGADTQGSEFEFTDFTIPSQSQTPASQHDHSLTTVNQ
VNGLGRTDLSSKVASVANAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVGPARAALLHAPVPAAAFAA
HRGRAPPAAARARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQ
DSTYQGGFRARGGQY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggtccgagctctcaaacgcttacattcctggagactgaagag
gctgatctaatcggtgctgacactcaagggtctgagtttgaattcaccgatttcactatc
ccatctcagagccaaacacctgcgtcccagcatgatcacagtttgaccacagtcaaccag
gtgaatggtctaggacggacggacctaagttctaaagttgcgagtgtcgctaatgcaata
gcagagttacaatttgaggaagaagatgaggctctgtacagcagcaaagaactgcctgac
catgcatgcaagtactgtggcattcacgatcccgccacggttgttatgtgcaatatctgt
aacaagtggttctgcaatggacgtggcaacacctccggttcccacatcattaaccacctg
gtgagagccaagcacaaggaagcagcattacaccgtgatggaccactgggagagacctta
cttgaatgctattcatgtggggctcgcaatgtgtttgttctcggatttattcctgctaaa
gcagactctgttgtggtgcttctttgtcgccagccatgtgctgcacagagttccctgaaa
gacatgaactgggatcaagagcaatggaaacctttaattgcggaccgtgctttcttgtca
tggcttgtaaaagttccttcagaggctgagcaaatgagagccagacaggtgacgcctcag
cagattggacgcctggaagagctctggcgtgacaacgttgatgctaccttccaagatttg
gagaagcctggagtggatgaagagcctcaccaagttcttttaagatacgaagatggatac
caatatcagaatatatttggcccacttgtaaaattggaagcggactatgacaaaagactt
aaggagtcccaaactcaggaggggattgaagtgcgctgggatgtggggcttaacaagaaa
acaatagcctatttcactctcgccaaaactgatagtgacatgaaacttatgcatggagat
gagttaagactgaggtacgtgggtgaattgcacaaggcgtggtcgggcgtgggccacgtg
atcaaggtgccggacaactacggcgacgacgtgggcctggagctgaagagcggcgccggc
gcgcctctcgactgcacctccaacttcgtcgtggacttcatttggaagagcacatctttc
gacagaatgcaactggcgctccgcaagttcgcggtggacgactcgtccgtgtcgggctac
atctaccgccgcctgctaggccacgaggtagaggaggtgctgttccgcgtgcacctgccc
aagcacttcagcgcgcccaacctgcccgacctcaacaggtcacaggtatatgccgttaaa
catgctctgcagcgcccactgtcactgatccaaggccctccgggcacgggcaagactgtc
acctctgcgactatcgtgtaccagctcgtgcgccagaacggcgggccggtgctcgtgtgc
gcgccgtccaacacggccgtggaccaactgacggagaagatccaccgcacggggctgaag
gtggtgcggctgtgcgccaagtcgcgcgaggccatggagtcgtccgtgtcgttcctggcg
ctgcacgagcaggcgcgcgcgctgggctcggccgacagcgagctgcgcaagctcacgcgc
ctcaaggaggaggcgggcgagctgtcggcggccgacgagcgccgctaccgcgcgctgcgc
cgcgccgccgagcgccgcctgctggacgcggctgacgtggtgtgcaccacgtgcgtcggc
gccggcgacccgcgcgtggcgcgcatgcgcttccagtccatcctcatcgacgagggcatg
cagtccaccgagcccgagtgcatggtgcccgtggtgctgggtgcgcgtcagctaatcctg
gtgggcgaccactgccagctggggcccgtcgtcatgtgcaagaaagcagccaaggcgggc
ctcagccagagcctgttcgagcgcctcgtggtgctcggcatccgccccttccgcctcgag
gtgcaataccgcatgcaccccgagctgtcgcgcttcccgtccgacttcttctacgagggc
tcgctgcagaacggcgttagcgccgaggagcggcgtctgcacaagatcgacttcccctgg
ccgcgcccggaccggccgatgttcttctacgtcacccagggccaggaggagattgcgggg
tcgggaacttcctacttgaatcgaacggaggccgccaacgtggagaagctcacgacccgc
ttcctgaaagccggcgtccgccccgaacagatcgggatcataaccccctatgagggccaa
cgctcgtacctcgtgcagcacatgcagtaccaaggcagcctgcacgccaagctctaccag
gagatcgaggtggccagcgtcgacgccttccagggacgcgagaaggacatcatcatcatg
tcctgcgtgcgctccaacgagcaccagggcatcggcttcctgagtgatccgcgccgcctg
aacgtggcgctgacgcgcgccaagtacggcctcatcgtcgtcggcaaccccaaggtgctc
agcaagcagccgctgtggaaccacctgctcgccttctacaaggagcggcgcgtgctcacg
gagggcccgctgtccaacctgaaggagtcggcgatccagttcgccaagcccaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtccacgtccatgttcgacgcgcgcgag
gccatggtgcccggctcggtgtacgaccgcgcgcggccgccgcgcgacccgctggcctac
gtgggccccgcgcgcgccgcgctgctgcacgcgcccgtgccggccgccgccttcgccgcg
caccgcggccgcgcgccgcccgccgccgcacgcgcgcgccgccgcccgccgcgcctgtcg
caggagccgctatcgcagcagccgccactgtcgctgtcgcagggcgcgtcgcagcccgac
ttcagccaggagtcggcggcgcccgactgcccgtcgcagccggacgggctgctgtcgcag
gactccacgtaccagggcgggttccgcgcgcgcggcggccagtactga
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