Manis javanica (Malayan pangolin): 108392783
Help
Entry
108392783 CDS
T06054
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108392783 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjv03021
]
108392783 (PCF11)
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108392783 (PCF11)
Transcription machinery [BR:
mjv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108392783 (PCF11)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108392783 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
108392783
NCBI-ProteinID:
XP_017508745
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGTAGARDDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISAPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSSLGPGSAPTKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKSSKTVPPEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMNKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRPVGSRNKVINGIVQKQDTITEELEKQGTKPGRSSTRKR
SRSRSPKARSPIIHSPKRRERRSPKRRQRSLSPTSLPKAGKMRQSGVKQSHMEEFMLPSR
EERSAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTDPKDNVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRVPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDNPASRFAGLDTNQRLTALAEDRPLFDGPTRPSVTRDGPTKMI
FEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGSGFRFEGAPGLRFEGSAGGLRFEGPGGQHVGSLRFEGHRGQPVSGI
RFEGPHGQPVGGLRYDNPRGQHVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVPQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDSVPQRFDGPQHQQASRFDMPLGLQGTRFDNHPSQRLESVSFN
QTGPYNDPPGSAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGHGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLSAPIAVGNIPASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGVLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSSTTQVNDVAAQPPPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPAENPLNIVLNIVKNELQEPCESPKVKEEQTDTPPACTEESRATPTEIKTEN
DTVD
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggacgacgcctgtcgg
gattatcagtcatctctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagttaattcg
ttagatcctgcttggcctattaaacctctacccccaaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgccagaagagccttcaacacctggcacagtggtc
agttcccctagcatctctgctcctccaattgttcctgatatacaaaagaatcttacccaa
gaacagctaataaggcagcagttactggcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaattggcagtttctcttagtgta
cagcaagaaacatctagcctaggtcctggatctgcaccaaccaaattacatgtttcacag
attccccctatggcagttaaagctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaagtcacaggaaggaattcctgatg
aacacattgaaccaatctgatattaagtcaagtaaaactgtaccccctgaaaaactgaat
tcatctaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgatcag
ttagattctaagtctaaatctaagtctaaatcaccatcacctttgaaaaacaaactgtcc
cacacaaaagacttaaaaaatcaagaatctgaaagcacaagggtgtctgacatgaacaaa
agagatccaagattaaaaaaacatcttcaagataagactgatagcaaagatgatgatgtg
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaagtcatcagaa
cacagaccggttggaagtagaaataaagtcataaatggcattgtacaaaaacaggataca
ataactgaagaattggaaaagcaggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcacgatcacccaaagctcggtcaccaattatacattctccaaagagaagagag
aggcggtcacccaaacggaggcaaaggagtttgtctccaacctcgttacccaaagctgga
aagatgcgccaatcaggagttaagcagtcacatatggaagagttcatgctaccatccagg
gaagaaagaagtgctaagagaagcaccaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaacgacctcaagaaactgcaaatcaacattcaacaaaatcaggcact
gacccaaaggacaatgtagaaaattggcaaagttccaagtctaccaaacgatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgatgaacatagtaaatctcctcacctg
agacatagggagagctggtcaagcactaaaggaatattgtcacctcgagtcccaaagcag
cagcatcgattaagtgtagatgccaatcttcaaattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgatgaacaagtctctgctaaaggtgtacgagaagaacagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagataaccct
gcatcaagatttgctggccttgatacaaatcagcgacttactgcgttagctgaagacagg
ccattatttgatgggcctactagaccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggtcctaataaactaagccctagaattgatggacctcctgcaccaggttctctt
cggtttgatggctcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtggatgtcctttgagatttgaaggtcctccaggaccagtaggt
acacctttgcggtttgaggggccaattggtcaagcaggaggcagtggttttcggtttgaa
ggtgcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
ggccagcatgttggtagtctcaggtttgagggacatcggggtcaacctgtgagtggtata
aggtttgaaggacctcatggtcagcctgtgggtggacttagatatgataatcctcgaggt
cagcatgtaggtggacttagatttgaagggggtcatggtccctcaggagctgcaattagg
tttgatggacctcatggtcagccaggaggtgggatcaggtttgagggccctttgctgcag
cagggagttggaatgaggtttgagggaccccatggtcagtccgtagctggtctgaggttt
gaaggacaacataatcagcttggtggaaacctcaggtttgagggtccacatggtcaacca
ggggttgggatcaggtttgaaggaccactagtcccacaaggtggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctttaggtcaaggtggtcca
agatttgagggttgtcatgctttaaggtttgatggacagccaggtcagccatcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaagaactggccaacca
ggcccacagagatttgatggaccacctggacagcaggttcaaccacgatttgatagtgta
cctcaaagatttgatggcccacaacaccagcaagcatcaaggtttgatatgcctcttggc
cttcaaggcacaagatttgacaatcatccttcacaaagacttgaatcagtatctttcaat
cagactggtccatataatgatccacctggcagtgcttttaacgccccatcccaaggacta
cagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggacca
catggccacggaaatcagagtttctcgaatcctcttaacagagcctctggacactatttt
gatgaaaagaatctgcagagttctcagtttggaaattttggcaatttatctgctccaata
gcagtaggaaatattccagcatctcaacaggttctgactggtgttgcacagccagtagca
tttggccaaggacaacaatttttacccgttcatccacaaaatcctggagcatttgttcag
aatccttcaggagtgcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaacttctaaaaacaggaattctcaaattgtcgcagcctgattcc
tctacaacacaagtaaatgatgttgctgctcagcctccccctgaagaggaagaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaactgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttattcttgtggaatgagg
tttacaacgtcacagacagatgtatacgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcaggaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagtttttt
gaaaaagtgcatgaagaagttgtgctcaaaactcaggaagctgctaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttaaaaaatgctattagagta
gatggaaagatttatcatccatcgtgttatgaagattatcaaaatacatcctcatttgat
tgtacaccatctcccagcaagacaccagccgaaaaccccttgaacattgtgttgaacatt
gtcaaaaatgaactgcaggaaccctgtgaaagtcccaaagttaaggaagaacaaactgat
accccaccagcttgtacagaagaaagcagagcaacacccactgaaattaaaacagaaaat
gatacagttgattaa
DBGET
integrated database retrieval system
