Manis javanica (Malayan pangolin): 108406009
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Entry
108406009 CDS
T06054
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03013
Nucleocytoplasmic transport
mjv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108406009 (UPF1)
03015 mRNA surveillance pathway
108406009 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108406009 (UPF1)
Enzymes [BR:
mjv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108406009 (UPF1)
5.6.2.5 RNA 5'-3' helicase
108406009 (UPF1)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108406009 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108406009 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108406009
NCBI-ProteinID:
XP_036859664
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGSGVAG
GPVGAGAAAGQLDPQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETIL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMIGAGPGPVAAVNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGLPGPSQANLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacagaggaa
gccgagctgctcggcgccgacacgcagggctccgagtttgagttcaccgacttcaccctt
cccagccagactcagacgcccccgggcggccccggcggccccgggagtggggtcgcgggg
ggcccggtgggcgcgggtgcggcggccggacagctggacccgcaggtcggcggacctgag
ggcatcctgcaaaatggggccgtggatgacagtgtggccaagaccagccagttgttggct
gaattgaactttgaagaagatgaggaagatacctattacacaaaggatctccccatacac
gcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaataccagcaag
aagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcacctcgtg
agggcaaaatgcaaagaggtgaccctgcacaaggatgggcccctgggagagacaattctg
gagtgttacaactgcggctgccgcaacgtcttcctccttggcttcatccctgccaaggcc
gactcggtcgtggttctgctgtgcaggcagccctgtgccagccagagcagcctcaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcttgtcctgg
ctggtcaagatcccctcggagcaggagcagctgcgggccaggcagatcactgcccagcaa
atcaacaagctggaggaactctggaaggaaaacccttctgccacgttggaggacctggag
aagccaggggtggacgaggagccacagcatgtcctcctgcgatatgaggacgcctaccag
taccagaacatattcggcccactggtcaagctggaggctgactatgataagaagctgaag
gagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagaga
atcgcctacttcactttgcccaagactgactctgacatgcggctcatgcagggggatgaa
atatgcctgcggtacaaaggggacttggcacccctgtggaaagggatcggccatgtcatc
aaggtccctgacaattatggcgatgagatcgccattgagctgcggagcagtgtgggtgca
cctgtggaggtgactcataacttccaagtggatttcgtgtggaagtccacctcatttgac
aggatgcagagcgcgttgaagacgtttgccgtggacgagacctctgtgtcggggtatatt
taccacaaactgctcggccacgaggtagaggacgtgatcatcaagtgccagctgccaaag
cgcttcacggcacaggggctccctgaccttaaccactctcaggtttatgctgtgaagact
gtgctgcagagacctctgagcctgatccagggacccccaggtacagggaagacagttacc
tcggccaccatcgtctaccacctggctcggcagggcaatgggcccgtgcttgtctgtgct
ccaagtaacatcgccgtggaccagctgaccgagaagatccaccagactgggctgaaagtt
gtgcggctctgcgccaagagccgtgaggccatcgactccccggtgtcctttctggctctg
cacaaccagatcaggaacatggacagcatgcctgagcttcagaagctgcagcagctgaag
gatgagactggggagctgtcgtcggctgacgagaagcggtaccgggccctgaagcgcacc
gccgagagggagttgctcatgaacgcagatgtcatctgctgcacatgtgtgggtgccggg
gacccgcggctcgccaagatgcagttccgctccattctcattgacgagagcacccaggcc
accgagcctgagtgcatggtccccgtggtcctcggagccaagcagctgatcctcgtgggt
gaccactgccagctaggccctgtggtgatgtgcaagaaggcagccaaggctggcctgtcc
cagtccctcttcgagcgcctggtcgtgctgggcatccggcccatccgcctccaggtccag
tatcggatgcaccctgcactcagcgctttcccgtccaacatcttttacgagggctctctc
cagaacggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccccag
cctgacaagccgatgttcttctatgtgacccagggccaagaggagatcgccagttcgggc
acctcctacctgaacaggacggaagctgcaaacgtggagaagatcaccacgaagctgctg
aaggcgggtgccaagccagaccagattggcatcatcacgccctatgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtg
gagattgccagtgtggacgcattccagggccgtgagaaggacttcatcatcctctcctgc
gtgagggccaacgagcaccagggcatcgggttcctaaatgacccccggcgactaaacgtg
gccctgaccagagcaaggtacggggtcatcattgtgggcaatccaaaggccctgtccaag
cagccgctctggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctgcgcgagagcctcatgcagttcagcaagcccaggaagctggtcaac
accatcaacccgggagcccgcttcatgacaacagccatgtatgacgcgcgggaggccatc
atcccaggatccgtctatgatcggagcagccagggtcgcccctcaaacatgtacttccag
acccacgaccagattggcatgataggtgcaggccctggccctgtggctgccgtgaacatc
cccatccccttcaacctggtcatgccgcccatgcccccacctgggtacttcggacaagcc
aacgggccggcggcaggccggggcaccccaaaaggcaagactggtcgtgggggacgccag
aagaaccgctttgggcttcctgggcccagccaggcgaatctccccaacagccaggccagc
caggatgtggcatcccagcccttctcgcagggcgccctgacccagggctacatctccatg
agccagccctcccagatgagccagccgggcctctcccagcccgagctgtcccaggacagt
taccttggcgatgaatttaagtcacagatcgatgtggcactgtcacaggactccacgtac
cagggggagcgagcgtaccagcacggtggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system