Methylacidiphilum kamchatkense: kam1_1865
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Entry
kam1_1865 CDS
T06102
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mkc
Methylacidiphilum kamchatkense
Pathway
mkc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
kam1_1865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkc03400
]
kam1_1865
Enzymes [BR:
mkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
kam1_1865
DNA repair and recombination proteins [BR:
mkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
kam1_1865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
UvrB_inter
ResIII
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QDQ43077
UniProt:
A0A516TPA4
LinkDB
All DBs
Position
1868941..1872042
Genome browser
AA seq
1033 aa
AA seq
DB search
MTFSPTKWLNHPLLKQQHKLLKQGGNWSMECLPTSAQSFFLASFIADFHSPTLVIAESIK
KVNELAIGLECWGSPYIVFPEIEPVSTESLPDPLLMAERLRAAYSLLNFFSGTILTTELA
LEEPLPSPSLLQEKRFLIVPGKTTDRSALIERLVEAGYERVDTVDNRGQFAVRGSIVDFF
SWDGLFPLRTEWEGNQIISLRQFHPITQRSFKPLDEAFLSLINAEDISKGKASLYDYLPK
MTPTFWSKAPEIAMPDIDIHFESHILLDAPKGDWFHQERRWEFFLSQLTQWIEKKWEIVI
FVNNEGEESRLKEILSNQGINIESIFFAKSPLLKGFSWPAAKLAILTDAEIFGRYQNQKI
CLRNQETNDALEKYLTGEISEQWKEGDYVVHLQHGICRFRGIKSMDGTNSEMIELEFDQK
AKLYVPIDQANLISRYIGGTKKQPKLDSLGGTRWLRAKSATEKAVSDLAERMLKINAERE
VLEGFAFPKDDHWQREFEESFIYEETADQLKAIEETKRDMESKRPMDRLICGDVGFGKTE
VAIRAIFKAVMGGKQAALLAPTTVLAKQHFNTLSERFADYPIRTALLCRLIKNSEEKEIL
TGLKNGSIDVVIGTHRLLSADVAFKDLGLIVIDEEQRFGVLQKEKWKETFRLIDVLSLSA
TPIPRTLYLALAGARDMSLIETPPPNRYPIETIVSAYDERIIRQAIERELNRGGQVYFLH
NRIRTIEKVASRIKSLLPSVKIAIGHGRMKKSELEEVMESFVNGQIDVLLATSIIENGLD
IPNANTIIIDRADLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQADAKKRIKAMQEH
SQLGVGFQIALRDLEIRGAGNLLGTSQSGHIASVGFELYCKLLKKAVQRLQGKEIDSLTD
CKVSLDFLLPEPGGGRHALAFIPFTYMERREERLQAYRQLAEALSLGELEEIKKGWKDRF
GAWPEPVENLFSITEIRLMGAAKGIERVESDQDKLKLMRHREYLFTAQGKFPRLIESDTK
TKIMQIKKWLEAF
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttctcctaccaagtggttgaaccatcccttgttaaaacaacaacacaagctg
ttaaagcaagggggcaactggagcatggaatgcttgcccacctccgctcaatcctttttt
cttgcctcctttatagccgatttccactcacccactttggtcatagcagaaagcattaaa
aaggtcaatgaattggccattggattagaatgttggggaagcccttacatagtctttcct
gaaattgaacctgtgtcgacggaaagcttaccggatccgttgttgatggccgaaaggcta
agagcagcctatagtctgctcaattttttttcagggactatcctgaccacagagttagct
ttagaagagcctctgccttcccctagcttattacaagaaaagcgttttctgattgtccct
ggaaaaacgactgatagatccgctctaatcgaacgactcgtggaagctgggtacgaaaga
gttgacacggtagataaccgaggccaatttgccgttcggggatcgattgtagactttttt
tcttgggatggtctctttcctttgagaacggaatgggaaggcaatcaaatcatctcgttg
agacaattccatccaattacgcaacgttcttttaagccccttgatgaagcttttctttct
cttatcaatgctgaggacattagcaagggaaaagcatcgctttacgattacttgcctaaa
atgacccccacattttggtcaaaggcaccggaaatagcgatgccagacatagatatccat
ttcgaaagccatattttactggatgcgcccaaaggagattggttccatcaggaaagacga
tgggaattctttctgtctcaactgactcaatggatcgaaaaaaaatgggagatcgtcatt
tttgttaacaatgaaggagaagaaagccgattaaaagaaatcctttctaaccaggggatt
aatatcgaatcgatcttttttgcaaaaagcccgcttctcaaaggcttttcctggcccgca
gccaaacttgccattctaaccgatgcagaaatttttggtaggtaccagaatcagaagatt
tgcttacgtaaccaagaaacgaacgatgcccttgagaaatacttgacgggtgagatctct
gaacagtggaaagaaggagattatgtggtgcatttgcagcatggtatctgccggtttaga
ggaataaagagcatggatggaacaaatagcgaaatgatcgagcttgaattcgaccaaaaa
gctaagctctacgttcctattgatcaagctaatctaatttctcggtatattggagggacc
aaaaaacagccaaaactcgattcgttaggcggcacacggtggctgcgagcaaaaagcgcc
acagaaaaagcagtgtcagaccttgccgaaagaatgcttaaaattaatgcagaaagagag
gtgctcgagggattcgccttccctaaagatgaccattggcaaagagaatttgaagagtct
tttatttatgaagagacagccgatcagctcaaagcaattgaagaaacaaaacgagatatg
gaaagcaaacggccaatggataggctcatctgcggggatgttggatttggcaaaacggaa
gttgccattcgggcaattttcaaagctgttatgggaggcaaacaagctgcactactggcg
cctaccacagtccttgcaaaacaacattttaatacgctttcggaacggtttgctgattat
cccattcggaccgctttgctctgtcgattgataaaaaatagtgaagaaaaggaaatactt
acagggcttaaaaacggatctatcgacgtagtgatcggaacgcacagactgctttctgct
gacgtcgcatttaaagatcttggattaatcgtcattgacgaagaacaacgctttggcgta
ctccaaaaagaaaaatggaaagaaacatttcggcttattgatgttctcagtctttcggcc
actcctattcccagaacgctttatttagcattggctggagctcgggatatgagtttaatc
gaaacgcctccccctaatcgttatcctatcgagacgattgtgagcgcctatgacgagcga
ataatacgacaagcgattgagcgagaattaaataggggcggacaggtgtattttcttcat
aatcgaatacggaccattgaaaaagtagcctcaaggataaaatcgcttttgccctctgta
aaaattgccataggtcatggaagaatgaaaaaaagcgagctagaagaggtaatggaaagt
tttgttaatggacagatcgatgtgctgctagccacaagcatcatagaaaacggcttagac
attcccaatgcgaacactatcattattgaccgagccgatctttttggtcttgctgatctc
tatcagttaagaggaagagtgggacgatccaatcaaaaagcctatgcttatctcttactc
ccaagggatttattcattcaagccgacgctaagaaaagaattaaagctatgcaagagcat
tctcaactgggtgtgggcttccagatagccttaagagatctagaaatacgaggagccggt
aatcttttaggcacctctcaaagtggtcatatcgcctctgtaggatttgaactctattgc
aaactactcaaaaaagcggtccaaagacttcagggtaaagaaatcgattctttaactgat
tgtaaggtctccttagattttttacttcctgagccaggaggcggcaggcatgccttagct
tttattccatttacttatatggaaagaagagaagagaggctgcaagcttatagacagcta
gctgaagcactcagtctaggggagctagaagaaatcaaaaaagggtggaaagacaggttt
ggtgcgtggcctgaacctgtagaaaaccttttttcaattactgaaatccggcttatggga
gctgccaaaggcatagaacgggtcgaatcggatcaggataagttaaaactaatgagacat
agggagtatttgtttacagcgcaaggcaaattcccacgcttgatcgaatcagatacaaag
actaaaataatgcagattaagaaatggttagaagccttctaa
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