Methylacidiphilum kamchatkense: kam1_744
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Entry
kam1_744 CDS
T06102
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mkc
Methylacidiphilum kamchatkense
Pathway
mkc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
kam1_744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkc03400
]
kam1_744
Enzymes [BR:
mkc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
kam1_744
DNA repair and recombination proteins [BR:
mkc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
kam1_744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDQ41990
UniProt:
A0A516TL65
LinkDB
All DBs
Position
complement(739350..740312)
Genome browser
AA seq
320 aa
AA seq
DB search
MNLDLLKLPKLEPMFLEPMLAKSSHCQLPYPGWIYEPKIDGMRIIAVKFDNQKTILFSRR
KLSENEKFPDILKTLSSSEESTWVLDGEIAALDQQGKPSFNLLQRARDKVLTVFYLFDLL
SLRKRDLRRLPLSTRKDLLYHFFSHLPSPVRLIPYFSEEPKKVAAKIKELGFEGVVAKRA
DSVYTSGKRSSAWLKFKFLKRQEFVIIGWTEPKGSLKPFGSLLLGYYQNNVLCYAGRVGS
GFSEQTALELYTLLKKLEISSSPFSQTPPIQFPRSLSIHWTKPMILCEVAFREWTALGKI
RQPIFVGIRTDKSPLEVTRE
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
gtgaacttagatctcttaaagttacctaaattggaacctatgtttttagagccgatgcta
gccaaaagcagtcattgccagcttccttatccgggctggatttatgaacctaaaattgat
gggatgaggattattgctgtcaaattcgacaatcaaaagactattcttttttctcgaagg
aagttatcagaaaatgaaaaatttcccgacattcttaaaactttaagttcttctgaagaa
tccacatgggttctagatggagaaattgctgctctcgaccaacagggcaaaccttctttt
aatcttcttcaaagggctagagacaaagttttgaccgttttttatctcttcgatctgctt
tctttaaggaagcgcgacctgcgcagattgcctcttagcaccagaaaagatcttctttac
cacttcttttctcatcttccctcccctgtccgcttgattccctatttttctgaagaacca
aagaaggtcgccgcaaaaattaaagagttaggttttgaaggagtcgttgcaaaacgtgct
gactctgtctacacatcggggaaaagatcttcagcgtggttgaaattcaagtttttaaag
cgacaggagtttgtcattataggttggacagagccaaaaggctcgctaaagccttttggc
tctcttcttttaggttattatcaaaataatgttctctgctatgccggtagggtaggcagt
gggttttcagaacaaacagctctggagctttatacgctcctaaaaaagcttgaaatttct
tcttccccattcagtcagacaccacccattcaatttcctagatctctttctatccactgg
acaaaaccaatgattctttgcgaagttgcatttagggaatggacggcacttggtaaaatc
cgccagcccatttttgtaggaatccgtacagacaaaagtcctttagaagtcactcgcgaa
taa
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