Mycobacterium kubicae: I2456_21795
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Entry
I2456_21795 CDS
T07774
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mku
Mycobacterium kubicae
Pathway
mku03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I2456_21795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mku03400
]
I2456_21795
Enzymes [BR:
mku01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I2456_21795
DNA repair and recombination proteins [BR:
mku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I2456_21795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPI37027
LinkDB
All DBs
Position
complement(4678158..4680425)
Genome browser
AA seq
755 aa
AA seq
DB search
MASAAQQRVKLTNADKVLYPATGTTKQDIFDYYTSIAEVMVPHIAGRAATRKRWPNGVDG
LSFFEKQLASSAPDWLPRASVTHKSGTTTYPIIDSEAGLAWIAQQAALEVHVPQWRFVAE
WTRKGAEELKPGPATRLVFDLDPGEGVTMAQLCQVAHAVRDLITDIGLTTYPLTSGSKGL
HLYTPLEEPVSSAGATVLAKRVAQQLEKAMPKLVTSTMTKSLRAGKIFLDWSQNNGAKTT
IAPYSLRGREHPTVAAPRTWEELEDPELRHLRYDEVLERVARDGDLLAALDVDAPVPDRL
TTYRSMRDASKTPEPVPGTKPAVGQNNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PESTSVNHLAVHTEDHPLEYASFEGNIPKGEYGAGKVIIWDAGTYEAEKFLDDEVIVTLH
GNRISGRYALIQTKGNQWLAHRMKDQKVFEFDSLAPMFASHGSVAGLKSGQWAFEGKWDG
YRLLVDADHGSLRLRSRSGRDVTSEYPQLRALAADLADHHVVLDGEVVALDESGVPNFHQ
MQNRVRATRIEFWAFDVLYLDGRSLLRAKYQDRRRLLETLASGVDLIVPDLLPGDGAQAL
EYSGRQGWEGVVAKKRDSSYQPGRRSASWIKDKHWNTQEVVICGWRAGEGGRTSGIGSLV
LGIPGPDGMRFAGRVGTGFSERDLAELKKTLAPLQTNQSPFRTRLPTRDAKGVTFVEPVL
VGEVRYSEWTPDDRLRQPSWRGLRPDKDPSEVVRE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggcgcagcagcgggtgaagctcaccaacgccgataaggtgctgtatccg
gccaccggcacgacgaagcaagacatcttcgactactacaccagcatcgccgaggtgatg
gtgccccacatcgcggggcgggcggcaacccgcaagcgttggcccaacggcgtcgatgga
ctgtcgttcttcgagaagcaactggcgtcctcggcgccggattggctgccgcgcgccagc
gtcacgcacaaatccggcaccacgacctacccgatcatcgacagtgaagcgggcctcgca
tggatcgcgcagcaggccgcactcgaggtgcacgtgccgcagtggcgattcgtcgctgag
tggacgcgcaagggcgccgaggagctcaagcccggtcccgcaacgcgtttggtgttcgac
ttggatcccggcgaaggcgtgacgatggcgcagctgtgccaggtggcacacgcggtccga
gacctgatcaccgacatcggcttgaccacctatccgctgaccagcggtagcaaggggttg
catctctacactcccctggaggagccggtgagcagtgccggtgccacggtgttggccaaa
cgcgttgcgcagcaactggaaaaggcgatgcccaaactggtcacgtcgaccatgacaaag
agcctgcgggcgggcaagatcttcctcgactggagccagaacaacggcgccaagaccacg
atcgcaccctactcgctgcgggggcgggagcatccgacggtggcggcgccgcgcacctgg
gaagaactggaagaccctgagctgcgccacctgcgctacgacgaggtgctggaacgggtg
gcccgcgacggtgacctgctggctgcgctggacgtcgatgcgcccgtgcccgaccggctg
accacctaccgcagcatgcgcgatgcgtccaagacgcccgaaccggtaccaggcacgaaa
cccgctgtcggacagaacaacaccttcgtcatacaggaacaccatgcccggcggctgcat
tacgacttccggctggagcgcgacggggtgctggtctcctgggcggtgccgaagaacctg
ccggagagcacctcggtcaaccaccttgcggtgcacaccgaggaccatcccctggaatac
gcctcgttcgaaggcaacatccccaagggagaatacggcgcgggcaaggtgatcatctgg
gacgccggcacgtacgaggcggagaagttcctcgacgacgaggtcatcgtgacgctgcac
ggcaatcgcatctcggggcgctacgcgctgattcaaaccaagggcaatcagtggctggcc
caccgcatgaaagaccagaaggtcttcgaattcgactcgctggcaccgatgttcgcctcc
cacggttcggtggccgggctcaagtcgggtcaatgggccttcgaaggcaagtgggacggg
taccggcttctggtggacgccgatcacggcagcctccggctgcgctctcgcagcggccgt
gacgtcacctccgagtatccccaattaagggctttggcagccgatctcgccgatcaccat
gtggtgctcgacggtgaggtcgtcgcactcgacgaatccggcgtgccgaactttcaccaa
atgcagaaccgggttcgcgccacgcgcatcgaattctgggcattcgacgtgctgtatctg
gacggtcgctcgctgttacgggcgaagtatcaggaccggcggcgattgctcgagaccctg
gccagtggtgtcgacctcattgtgcccgacctgctgcccggcgacggcgcccaagcgctg
gagtattcgggccggcaaggatgggaaggcgtcgtggccaagaagcgtgactccagctat
cagcccggccggcgctcggcgtcgtggatcaaggacaagcattggaacacccaagaagtc
gtcatctgcggctggcgagccggtgaaggcggccgaaccagcgggatagggtcgctggtg
ctcgggataccaggtccggacggcatgcgattcgccggtcgcgtaggcaccggcttcagc
gaacgggacctggccgagctcaagaaaacactcgctccgttgcaaaccaaccaatctccg
ttccgcaccaggcttcccacccgcgacgccaagggcgtcaccttcgtcgagccggttctg
gtgggggaggtgcgctacagcgagtggacacccgatgaccggctgcggcagccgagttgg
cgggggctgcggccggacaaggaccccagtgaggtggtgcgggaatga
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