KEGG   Microvirga lotononidis: U0023_24705
Entry
U0023_24705       CDS       T09656                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mld  Microvirga lotononidis
Pathway
mld03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mld00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    U0023_24705 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mld03400]
    U0023_24705 (ligD)
Enzymes [BR:mld01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     U0023_24705 (ligD)
DNA repair and recombination proteins [BR:mld03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     U0023_24705 (ligD)
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: WQO30636
LinkDB
Position
unnamed1:261182..263761
AA seq 859 aa
MVAVPPRLKTRKAPSRSRATTKRASGSLATYRAKRDFSITSEPKAARAKSQGNRFVVQKH
DARRLHYDLRLELDGVLKSWAVTRGPSLVPGERRLSVHTEDHPLKYIDFEGVIPAGQYGG
GTMIVWDQGRWIPEGDPHADYARGRLTFTLEGDRLKGKWHLVRTRGKPGEKNEQWLLLKS
DDEAARTSEDPDILAQETTSLKSGRSIEELAAQGAIRVDHAAREKVARSKPQKSRRPLKV
KGAKKGILPAFVEPALAQLVESAPRGGTWLHEIKLDGYRMQARIDAGQVQLLTRKGLDWT
AKFKPIANALKELKIPSALLDGEIVVEDEAGVASFSALQQELKGGKGERFVYYVFDLLYL
DGEDLRKATLADRKAVLRLLLDDLPQGGAIRFSEHLEEDGATLVRHACRMGLEGIISKRA
DQPYRSGRGDDWVKSKCTQRQELVIAGYLPSSASKKAVGSLVMGVYEAGKLIPVGRVGTG
FTSEVAGALYKTLTSIEIKASPFAKKLPATASRGVKWVNPELVAEVEFRGWTHDGMIRQG
SFQGLREDKDPRDVVRETTVQGSRDTSPGAAILEKAHLTHPDRVLWEDEGITKLGLAEFY
TEISDWILPHIVNRPLSLLRCPGGSQKECFFQKHAWAGLDEDLIQRVRVGEDEAVAIQDL
SGLFALVQAGVLEIHPWGSTLKNPEKPDRLVFDLDPGEGVSWDGVVQGAIDVRDHLQGIS
LESFVKTSGGKGLHVVVPLRPKASWEEAKEFADSVAAAMTKASPALYTDTMAKRARTGRI
FIDYLRNGRGATAVAPYSTRARAGAPVSTPVTWEELSTIRSGNQYRISNLAARLLHLQDD
PWGEFGNIDQVIPKSGTRS
NT seq 2580 nt   +upstreamnt  +downstreamnt
atggtcgcggtcccacctcgtctgaaaaccaggaaggccccgtcgcgaagccgggccacc
acgaaaagagcctccggttcgctcgccacctaccgggcgaaacgcgacttctctatcacg
agcgaacccaaggcggcgagagccaagtcccagggcaaccgctttgtggtgcagaaacat
gatgctcgccgcttgcactatgacctgcggctggagcttgatggggttctcaaaagctgg
gcggtgacgagaggaccgagcctggtcccgggcgagaggcgcctctcggtgcataccgag
gatcatcccctgaagtacatcgatttcgagggcgtcattccggctggccagtatggcggc
gggacgatgatcgtctgggatcagggccgctggattccggaaggcgatccgcatgccgat
tatgcccgtggtcgtttgacgttcacccttgagggcgaccgtctcaagggcaagtggcac
ctcgtgcggacccgcggcaaaccgggcgagaagaatgagcagtggctgctgctcaagtcc
gacgatgaggctgctcggaccagtgaagatccggacattttggcgcaggagacgacttcg
ctcaaatcaggccggagcattgaggaactggctgcccagggcgccatccgggtcgatcat
gctgcacgcgaaaaggtggccagatccaagccgcagaaatcgcgacgacccttgaaggtc
aaaggtgcaaagaagggtattctgccagcctttgtcgaaccggcattggcacaattggtt
gagagtgccccaagaggtggcacctggcttcacgagatcaagctcgatggctatcgcatg
caggcccgcatcgatgcaggccaggtccaacttctgacccgcaagggcctcgactggact
gcgaagttcaaaccaatcgcaaatgccctcaaagaattgaagatcccctcagcattgctt
gacggcgaaatcgtcgtggaggatgaggcaggtgtagcaagcttctcggcgctccagcag
gagctaaagggcgggaaaggcgagcgcttcgtctactatgtcttcgatctgctttatctc
gacggagaggacctgaggaaggcgacactggcagaccgcaaggcggtcttgcggctcctg
cttgatgacctgcctcagggtggcgccatccgcttcagtgaacatcttgaggaggatggc
gcaactctcgtgcggcacgcgtgccggatgggtctggaggggatcatctccaagcgcgcc
gatcagccctacagatcgggacgaggcgacgactgggtcaagtcgaagtgcacgcagcgc
caggaactggtgatcgccggctacctgccatcaagcgcgagcaagaaggctgtgggctcg
ctcgtcatgggggtctatgaggctggcaagcttatccctgtcggtcgcgtcggcaccggc
ttcacatcggaggtcgcgggcgcactctacaagaccctcacgtcgatcgagatcaaggcc
tcgccctttgccaagaagctccctgccaccgcaagccgtggggtgaaatgggtgaacccg
gaactggttgctgaggtggagttccgcgggtggacccatgacggcatgatccggcaaggc
tccttccaagggctgcgcgaggacaaggatccgcgggacgtcgtgcgggagacaacagtg
cagggctctcgcgacacaagccctggtgctgcgatccttgagaaggcccatctcacgcat
ccagaccgcgtgctgtgggaggacgaagggatcaccaagctcgggctcgcagagttctat
acggagatctccgattggatcctgccgcacatcgtgaaccggccgctgtcgctcctgcgc
tgcccaggcggatcgcagaaggagtgctttttccagaagcacgcctgggcgggccttgat
gaggacctgatccagcgggtccgcgtcggagaggatgaggctgttgcgatccaggatctg
tccgggcttttcgccttggtgcaagccggcgttcttgagattcacccatggggctcaacg
ctgaagaacccggagaaacccgatcggcttgtcttcgacctggatccaggggagggcgtc
agctgggatggggtcgtacaaggcgcaatcgacgtgcgtgatcatctgcagggtattagc
cttgagagcttcgtcaaaacctctggaggcaaaggtctgcacgttgtcgtgccgctccgc
ccaaaagcttcctgggaggaggccaaagagttcgctgatagcgtcgcagcagccatgacg
aaggcaagcccggctctctacacggatactatggcgaagcgggccaggacgggccggatc
ttcatcgattacctgcggaatgggcggggggcgacagccgtggcgccctattctacccga
gccagggctggcgctccggtgtccacgccagtgacgtgggaggaactgtcgacgatccgc
agcggcaatcaatatcgaatcagcaatctggccgcgcgcttgcttcatcttcaggatgac
ccttggggcgagtttggaaacatcgaccaagtgatcccgaaatccgggacacgttcttag

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