Microvirga lotononidis: U0023_24705
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Entry
U0023_24705 CDS
T09656
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mld
Microvirga lotononidis
Pathway
mld03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U0023_24705 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mld03400
]
U0023_24705 (ligD)
Enzymes [BR:
mld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U0023_24705 (ligD)
DNA repair and recombination proteins [BR:
mld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U0023_24705 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WQO30636
LinkDB
All DBs
Position
unnamed1:261182..263761
Genome browser
AA seq
859 aa
AA seq
DB search
MVAVPPRLKTRKAPSRSRATTKRASGSLATYRAKRDFSITSEPKAARAKSQGNRFVVQKH
DARRLHYDLRLELDGVLKSWAVTRGPSLVPGERRLSVHTEDHPLKYIDFEGVIPAGQYGG
GTMIVWDQGRWIPEGDPHADYARGRLTFTLEGDRLKGKWHLVRTRGKPGEKNEQWLLLKS
DDEAARTSEDPDILAQETTSLKSGRSIEELAAQGAIRVDHAAREKVARSKPQKSRRPLKV
KGAKKGILPAFVEPALAQLVESAPRGGTWLHEIKLDGYRMQARIDAGQVQLLTRKGLDWT
AKFKPIANALKELKIPSALLDGEIVVEDEAGVASFSALQQELKGGKGERFVYYVFDLLYL
DGEDLRKATLADRKAVLRLLLDDLPQGGAIRFSEHLEEDGATLVRHACRMGLEGIISKRA
DQPYRSGRGDDWVKSKCTQRQELVIAGYLPSSASKKAVGSLVMGVYEAGKLIPVGRVGTG
FTSEVAGALYKTLTSIEIKASPFAKKLPATASRGVKWVNPELVAEVEFRGWTHDGMIRQG
SFQGLREDKDPRDVVRETTVQGSRDTSPGAAILEKAHLTHPDRVLWEDEGITKLGLAEFY
TEISDWILPHIVNRPLSLLRCPGGSQKECFFQKHAWAGLDEDLIQRVRVGEDEAVAIQDL
SGLFALVQAGVLEIHPWGSTLKNPEKPDRLVFDLDPGEGVSWDGVVQGAIDVRDHLQGIS
LESFVKTSGGKGLHVVVPLRPKASWEEAKEFADSVAAAMTKASPALYTDTMAKRARTGRI
FIDYLRNGRGATAVAPYSTRARAGAPVSTPVTWEELSTIRSGNQYRISNLAARLLHLQDD
PWGEFGNIDQVIPKSGTRS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcggtcccacctcgtctgaaaaccaggaaggccccgtcgcgaagccgggccacc
acgaaaagagcctccggttcgctcgccacctaccgggcgaaacgcgacttctctatcacg
agcgaacccaaggcggcgagagccaagtcccagggcaaccgctttgtggtgcagaaacat
gatgctcgccgcttgcactatgacctgcggctggagcttgatggggttctcaaaagctgg
gcggtgacgagaggaccgagcctggtcccgggcgagaggcgcctctcggtgcataccgag
gatcatcccctgaagtacatcgatttcgagggcgtcattccggctggccagtatggcggc
gggacgatgatcgtctgggatcagggccgctggattccggaaggcgatccgcatgccgat
tatgcccgtggtcgtttgacgttcacccttgagggcgaccgtctcaagggcaagtggcac
ctcgtgcggacccgcggcaaaccgggcgagaagaatgagcagtggctgctgctcaagtcc
gacgatgaggctgctcggaccagtgaagatccggacattttggcgcaggagacgacttcg
ctcaaatcaggccggagcattgaggaactggctgcccagggcgccatccgggtcgatcat
gctgcacgcgaaaaggtggccagatccaagccgcagaaatcgcgacgacccttgaaggtc
aaaggtgcaaagaagggtattctgccagcctttgtcgaaccggcattggcacaattggtt
gagagtgccccaagaggtggcacctggcttcacgagatcaagctcgatggctatcgcatg
caggcccgcatcgatgcaggccaggtccaacttctgacccgcaagggcctcgactggact
gcgaagttcaaaccaatcgcaaatgccctcaaagaattgaagatcccctcagcattgctt
gacggcgaaatcgtcgtggaggatgaggcaggtgtagcaagcttctcggcgctccagcag
gagctaaagggcgggaaaggcgagcgcttcgtctactatgtcttcgatctgctttatctc
gacggagaggacctgaggaaggcgacactggcagaccgcaaggcggtcttgcggctcctg
cttgatgacctgcctcagggtggcgccatccgcttcagtgaacatcttgaggaggatggc
gcaactctcgtgcggcacgcgtgccggatgggtctggaggggatcatctccaagcgcgcc
gatcagccctacagatcgggacgaggcgacgactgggtcaagtcgaagtgcacgcagcgc
caggaactggtgatcgccggctacctgccatcaagcgcgagcaagaaggctgtgggctcg
ctcgtcatgggggtctatgaggctggcaagcttatccctgtcggtcgcgtcggcaccggc
ttcacatcggaggtcgcgggcgcactctacaagaccctcacgtcgatcgagatcaaggcc
tcgccctttgccaagaagctccctgccaccgcaagccgtggggtgaaatgggtgaacccg
gaactggttgctgaggtggagttccgcgggtggacccatgacggcatgatccggcaaggc
tccttccaagggctgcgcgaggacaaggatccgcgggacgtcgtgcgggagacaacagtg
cagggctctcgcgacacaagccctggtgctgcgatccttgagaaggcccatctcacgcat
ccagaccgcgtgctgtgggaggacgaagggatcaccaagctcgggctcgcagagttctat
acggagatctccgattggatcctgccgcacatcgtgaaccggccgctgtcgctcctgcgc
tgcccaggcggatcgcagaaggagtgctttttccagaagcacgcctgggcgggccttgat
gaggacctgatccagcgggtccgcgtcggagaggatgaggctgttgcgatccaggatctg
tccgggcttttcgccttggtgcaagccggcgttcttgagattcacccatggggctcaacg
ctgaagaacccggagaaacccgatcggcttgtcttcgacctggatccaggggagggcgtc
agctgggatggggtcgtacaaggcgcaatcgacgtgcgtgatcatctgcagggtattagc
cttgagagcttcgtcaaaacctctggaggcaaaggtctgcacgttgtcgtgccgctccgc
ccaaaagcttcctgggaggaggccaaagagttcgctgatagcgtcgcagcagccatgacg
aaggcaagcccggctctctacacggatactatggcgaagcgggccaggacgggccggatc
ttcatcgattacctgcggaatgggcggggggcgacagccgtggcgccctattctacccga
gccagggctggcgctccggtgtccacgccagtgacgtgggaggaactgtcgacgatccgc
agcggcaatcaatatcgaatcagcaatctggccgcgcgcttgcttcatcttcaggatgac
ccttggggcgagtttggaaacatcgaccaagtgatcccgaaatccgggacacgttcttag
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