Methylovirgula ligni: CWB41_00675
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Entry
CWB41_00675 CDS
T05824
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWB41_00675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_00675 (mfd)
Enzymes [BR:
mlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWB41_00675 (mfd)
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CWB41_00675 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
SecA_DEAD
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAY94432
LinkDB
All DBs
Position
complement(151141..154659)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTDIKRATAELAKKQTLILASLPDGFDAFCIADLTRALAPAAEDRAVVLAHVARDEQRAR
AFNEALAFAAPEIEVLDFPGWDCQPYDRTSPNAAIAARRMTVLSRLARSRTAAERPRILS
TTINAVLQRVPPLEKIAADSFSAAPGNAVNMTSLTQWLENNGFARASAVRDTGEYAVRGG
ILDLFAPSLPEPIRLDFFGDTLESIRTFDPETQRTVAPLRAVDLVPMSEVQLTSDSMRRF
RQGYVTQFGGGLRGDTLYEAVSEGRRHPGLEHWLPLFYDGLDTLFDYTGGAPLVLDPLTE
EAAGERFAQIRDYYEARKSAHDADPVNSPYKPLAPDALYLPAKEWDKALASQGVARVTPF
LPPEGSRTPVIDCAGKLGRNFAAERADEGANVFRAAAEHVQSLQAQGKRVVVAGWSEGSR
ERLGHVLKDFGIHALEPVSSFGEALRLPKSAVALAVIGLETGFEAPALAVIGEQDILGDR
LIHGRKKARRAQDFIAEIGALTAGDLVVHVDHGIGRFHGLTPVEAAGAPHDCLEIHYAGG
DKLFLPVENIELLSRYGSEDSEVELDRLGGAGWQKRKARMRKRILEMAAGLLRIAASRQT
HAAPKLVPPEPLYEAFCTGFPYDETEDQAATIEAVLDDLASGKPMDRLVCGDVGFGKTEV
ALRAAFVAAINGKQVAVVVPTTLLARQHARNFAARFAGLPIKVAQLSRMVGTAETKAAKA
ALTSGEVDIVVGTHALLGKQIAFKNLGLVIIDEEQHFGVKHKERLKELRAEVHVLTLSAT
PIPRTLQLALTGVRELSIIATPPVDRLAVRTSVSPFDPLLVREALLRERYRGGQSFYVCP
RIEDIEEAGAFLRQNVPEAKYVIANGQLPASELEARMAAFYDGRYDILLSTAIVESGLDI
PRANTLIVHRADMFGLAQLYQLRGRVGRAKSRAYALFTTPLHKKLTVQAEKRLSVLQSLD
TLGAGFQLATHDLDLRGAGNLLGEDQSGHIKEVGYELYQQMLEEAVLALKAGIEEPAEEA
WSPAITLGTPVTIPEDYVADVDLRLGLYRRLSTLETDTEIEAMAAEMIDRFGPLPREVEQ
LLALVAIKALCRRANVEKVEAGPKGVTLTFRDNSFANPQALVRYVAEQGSQAKVRPDMRV
VFIRDFENPAERLDGTRTILRTLAAMVKKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatatcaaacgcgcgactgccgaacttgccaaaaagcagacccttatcctggcc
tccctgccggacgggttcgatgccttttgcatcgccgacctgacccgggcgctggccccg
gcggcggaggatcgcgccgtcgtgctggcccacgtcgcccgcgacgagcagcgcgcccgc
gccttcaacgaggcgctcgccttcgccgcaccggagatcgaagtgctcgatttccccggc
tgggattgccagccctacgatcgcacgtcgcccaatgcggcgatcgccgcacggcggatg
acggtattgtcgcgactcgcgcgttcgcgcaccgccgccgagcgtccgcgcattctctcg
acgacgatcaatgctgtcctccagcgcgtgccgccgctcgaaaaaatcgcggccgattcc
ttctccgccgcgcccggcaatgccgtcaacatgacgagcctcacgcaatggctggagaac
aacggcttcgcccgcgcctccgccgtgcgcgataccggcgaatatgccgtgcgtggcggt
attctcgatctcttcgcgccgtcgttgccggagccgatccggctcgatttcttcggcgat
acgctggaatcgatccgcaccttcgatcccgagacgcagaggacggtcgcgccgctgcgc
gccgtcgatctcgtgccgatgagcgaagtgcaattgacgtccgactccatgcgccgcttc
cgtcaaggctatgtcacgcaattcggcggcggcttgcgcggcgacacgctctatgaggcg
gtgagcgaaggccgccgtcatcccggcctcgaacattggctgccgttgttttacgacggg
ctcgacacgttgttcgattataccggcggcgccccgctggtgcttgatccattgacggag
gaagctgcgggcgaacgtttcgcgcaaatccgtgattattacgaggcgcgcaaaagcgcg
cacgatgccgatcccgtcaattcgccctataagccgctggcgcccgacgcgctttatctg
ccggcgaaggaatgggacaaggcgctggcgtcgcaaggcgtcgcgcgggtcacgccgttt
ttgccgccggaaggcagcaggacgccggtcatcgattgcgccggcaagctcggccgtaat
ttcgcggcggagcgtgcggacgagggcgccaatgtcttccgcgctgcggcggagcatgtt
caatccttgcaggcgcagggcaagcgcgttgtcgtcgccggctggtccgagggctcgcgc
gagcgtcttggccatgtgctgaaggacttcggcattcacgcgctcgagccggtttcgtcc
ttcggcgaggctttgcggctgccgaaatccgctgtcgcgctggccgtcatcggcctcgaa
actggtttcgaggcgcccgcgctcgcggtgatcggcgagcaggacattctcggcgaccgt
ttgattcatggtcgcaagaaagcgcgccgcgcacaggatttcatcgccgagatcggcgca
ctcacggcgggcgatctcgtcgtccatgtcgatcacggcatcgggcgctttcatggcctc
acgccggtcgaggcggcgggcgcgccgcacgattgcctcgaaatccactatgccggcggc
gacaagctcttcctgccggtcgagaatatcgagcttttgtcgcgctacggatcggaggat
tccgaggtcgagctcgacaggctcggcggagcgggctggcagaagcgcaaggcgcggatg
cgcaagcgcatcctcgaaatggccgcgggccttctgcgcatcgccgcgtcccggcagacc
cacgcggcgccgaagctcgtgccgcctgagccgctttacgaagccttctgtacgggcttt
ccttatgacgagacggaggatcaggcagcgacgatcgaggccgttctcgacgatctcgcc
tcgggaaagccgatggaccggctcgtttgcggcgatgtcggcttcggcaagacggaggtg
gcgctgcgcgccgctttcgtcgcggcgatcaacggcaagcaggtggcggtcgtcgtgccg
acgactttgctggcgcgccagcacgccaggaatttcgccgcgcgcttcgccggcctgccg
atcaaggtcgcgcaactctcgcgcatggtcggaacggcggagaccaaggccgcgaaggcg
gcgcttacctccggcgaagtcgacatcgtcgtcggcacacatgcgctgctcggcaagcag
atcgccttcaagaatctcggcctcgtcatcatcgacgaggagcagcatttcggcgtcaag
cacaaggagcggctgaaggagctgcgtgccgaagtgcatgtgctgacgctttcggcaacg
ccgattccgcgcacgctgcaactcgcgctgactggcgtgcgggaactttcgatcatcgcg
acgccgccggtcgaccggctggcggtgcgcacctctgtcagcccgttcgatccgctgctc
gtgcgcgaggctttactgcgcgaacgctatcgcggcggccagagcttttacgtctgtcca
cgcatcgaggatatcgaggaggccggcgccttcctgcgccagaacgtgccggaggcgaaa
tatgtgatcgccaacggccagcttccggcttcggaactcgaagcgcgcatggccgccttc
tatgatggcagatatgacattctgctctcgacggcgatcgtcgaatccgggctcgacatt
ccgcgcgccaatacgctcatcgtccatcgcgccgatatgttcggcttggcgcagctctat
caattgcgcggccgggtcgggcgcgccaagtcacgcgcctatgccctgttcacgacgcca
ctccacaaaaagctgacggtgcaggccgaaaagcgcctgagcgtgctgcaatcgctcgat
acgctcggcgcgggcttccagctcgcgacccacgatctcgatctccgcggcgccggcaat
ttgctgggcgaggatcaatccggccacatcaaggaggtcggctatgagctttatcagcag
atgctggaagaggcggtgttggcgctgaaggccggcatcgaggaaccggcggaggaggcc
tggtcgccggcgatcacgctcggcacgccggtgacgatcccggaggattatgtcgccgat
gttgatctgcggctcggcctctatcgccgcctctcgacgctcgaaaccgacaccgagatc
gaggcgatggcggccgagatgatcgatcgcttcggcccgttgccgcgcgaggtcgagcaa
ttgctcgcgctcgtcgccatcaaggcgctctgccgcagggccaatgtcgaaaaggtcgag
gcggggccgaagggcgtcaccctgaccttccgcgacaattccttcgccaatccgcaagcc
ctcgtgcgctatgtcgcggagcaggggtcgcaggccaaggtgcggcccgatatgcgcgtc
gtcttcatccgagatttcgagaatccggccgagcggctcgacggcacacgcacgattctg
cgaacgcttgccgccatggtgaagaagaaggcggcttaa
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