Methylovirgula ligni: CWB41_08380
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Entry
CWB41_08380 CDS
T05824
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CWB41_08380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_08380 (ligD)
Enzymes [BR:
mlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CWB41_08380 (ligD)
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CWB41_08380 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QAY95753
LinkDB
All DBs
Position
1731057..1733633
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AA seq
858 aa
AA seq
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MALETYRKKRDFTVTSEPRGLKGRSSGNAFVVQKHDATRLHYDFRLELDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPEGQYGAGTVLVWDRGTWTPEGDPEKAYAKGH
LDFTLHGEKLKGRWHLVRMHPRPGEKRENWLLIKGEDDQARGPGDPDILEEEPNSVITGR
SLEDIAGDKKSRRWTSGKAAQPRVETPGSPRARAMAPVESIKSDPPAKKKRALPPVKRAP
FAFSPPKGAKRKALPDFIAPMLPTLVATPPSGAQWIHEVKFDGYRIEAVVKAGKVKLRTR
TGLDWADRFPTVAAAFAQLPVKDCIVDGEVVVEEANGISDFSALQNALSEGETGSMVYYA
FDLMHIDGYDLTGLPLVARKEILQSLLKATPDVILRYSDHFDENGELMLQHVCRLGAEGV
VSKKRESHYLSKRSTDWLKIKCANRQEFVIAGYVPSTTTRKAIGSLVLGYYENGKLRHAG
RVGTGYSSKMALDLFALLSRERIEKPAFESPLSSEARRNAVWVKPDRVAEVEFRGWTADA
NLRQASFKGLREDKNPKDIVRERVAPMAKEAEAPATSVTFTHRDRVYWPEAGVTKQGLAD
YYTMVWPWIEKYLLGRPLVLLRCPNGIVQGGFFQKHPWAGIDPHILQIHDPHEKEPILGI
DSFDGLMALVQSAALEIHPWGARSDDLDHPDRLIFDLDPGEGVAFAEIIAAAKEVRRRLA
EAKLKSFVKTTGGKGLHVVAPLTPRATWTVAKDFCRALADSMAHDAPQLYTATATKTQRP
KRIYIDYLRNARGATAVAPYSTRARPPAGISTPLTWDELDSVVSGSQFTIGNFSKRLQHL
AKDPWDGFFRLRQSLPGK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
ttggccctcgaaacctaccgcaagaagcgtgatttcactgtcacgtcggagccgcgcggc
cttaaggggcgttcgtccggcaatgccttcgtcgtgcagaaacacgacgcgacacggctg
cattacgatttccggctcgaactcgacggcgtcctcaagagctgggcggtgacgcgcggg
ccgagccttgtgccgggcgagaagcgcctcgccgtccatgtcgaggatcatccgctcgat
tacggctccttcgaggggacaattccggaggggcaatatggcgcgggcacagtgctggtc
tgggatcgtggcacctggacgccggagggcgatccggagaaagcctatgccaaaggtcac
ctggacttcacgcttcatggcgagaagctgaaaggccgctggcaccttgtccgcatgcac
ccgcgtccgggcgagaagcgcgagaattggctgctcatcaagggcgaagacgaccaagcg
cgcgggccgggcgatccggacatcctcgaagaggagccgaattcggtcatcaccggccgc
tcgcttgaagatattgccggcgacaagaagagtcggcgctggacctcggggaaggcggcc
cagccgcgggtcgaaacgcccggttcgccgcgcgcccgcgccatggcaccggtcgagagc
atcaaatcggatccgccagcgaagaagaagcgcgcattgccgccggtcaagcgggcgccg
ttcgccttctcgccgccgaaaggcgcgaagcggaaggcgctgccggatttcatcgcgccg
atgctgccgacgctcgtcgccacgccgccctccggagcgcaatggattcatgaggtcaaa
ttcgacggctatcgcatcgaggcggtcgtgaaggccggcaaggtgaagctgcgcacgcga
acggggctcgattgggccgaccgcttcccaaccgtcgccgctgctttcgcgcaattgccg
gtcaaggattgcatcgtcgacggcgaagtcgtggtcgaggaggcgaacggtatttcggat
ttctcggctctgcaaaacgcgctcagcgagggcgagactggtagcatggtctattatgcc
ttcgatcttatgcatatcgacggctacgatctgacgggtctgccgcttgtcgcgcggaaa
gagattctgcaatcgctgctgaaagccacgccggacgtgatcctgcgctacagcgatcat
ttcgacgaaaatggcgaactcatgctgcagcatgtttgccggctcggcgccgagggcgtc
gtctcgaagaagcgggagagtcactatctttccaagcgcagcaccgactggctgaagatc
aaatgcgccaaccggcaggaattcgtcatcgccggctatgtgccctcgacgacgacgcga
aaggccatcggctcgctcgtgctcggctattacgagaacggcaagctccgccacgccggg
cgcgtcggcacgggctattccagcaaaatggcactcgacctcttcgcgctgctctcgcgc
gagcggatcgaaaagccggcattcgagtcgccgctcagcagcgaggcgcggcgcaatgcc
gtctgggtaaagcccgaccgggtcgcggaggttgaatttcgcggctggacggcggatgcc
aatctgcggcaggcatcgttcaagggcttgcgcgaggacaaaaatcccaaggacatcgtt
cgcgaaagggtcgcaccaatggccaaagaagccgaggctcccgcgacgtccgtgacgttc
acccatcgcgaccgagtctattggcccgaggccggcgtcaccaagcagggccttgccgat
tattacacgatggtttggccgtggatcgaaaaatacctgcttggccggccgctcgtcctg
ctgcggtgtccgaacggcatcgtgcaaggcggcttcttccagaagcatccctgggccggg
attgatccccatattctgcaaatccacgatccacacgaaaaggagccaatcctcggcatc
gattcattcgacgggttgatggcactggtgcaatcggcggcgctcgaaatccacccctgg
ggcgcgcgcagcgacgacctcgatcatcccgatcgcctgattttcgatctcgacccgggg
gagggcgtcgccttcgcggaaatcattgctgccgcgaaagaggttcgccggcgtctggcc
gaagccaaactcaaaagcttcgtcaagacgaccggcggcaagggtcttcatgtcgtcgcg
ccgctgacgccccgcgcaacatggacggtggcgaaggacttctgccgggctctggccgat
tccatggcgcatgatgcgccgcaactctacactgcgacggcgacgaagacgcagaggccc
aagcgcatctatatcgactatctgcgcaacgcccgcggtgcgacagccgtcgcgccctat
tcgacgcgcgcgcggccgccggccggtatttcgacgccgcttacctgggatgaactcgac
agcgtggtgagcggcagccagttcaccatcggcaatttcagcaagcggctgcaacatctc
gccaaagatccgtgggacggatttttccggctgcggcagagcttgcccggcaaatag
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