Metabacillus litoralis: KDJ21_023130
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Entry
KDJ21_023130 CDS
T08411
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlit
Metabacillus litoralis
Brite
KEGG Orthology (KO) [BR:
mlit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KDJ21_023130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlit03400
]
KDJ21_023130
Enzymes [BR:
mlit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KDJ21_023130
DNA repair and recombination proteins [BR:
mlit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KDJ21_023130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UHA59625
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Position
4578710..4580539
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AA seq
609 aa
AA seq
DB search
MKPMLPTLHADIPTGSDWIYETKYDGFRSILTITNTSIELMSRNEKSLNDNFPEIINEVK
KLHKAFEPFLPITLDGELVYLETPHFSNFELLQIRGRLKNKEKILHEAEKHPCRFLAFDL
LELKGNSLQSNTLKERKSELKNLFKALNLGTTVDTKTSNLFQYVPCTTDYSTLWQEMKLE
DGEGIIAKQHKGKWEAGVRTKQWLKIKNYKRACFFITGYDKENGYFHVGVYAKNNIIQAG
VFSHGISSQERDALLQIIRENKQSETANFIEIKPAIVVELQFLSLYKNQLREPSFFTFRF
DYHVEDCTWDMLLLKTAPIHQEISITHPDKPLWETVDLKKETFLSYLVQISPYMLPFLQN
RLLTVIRFPHGMFGEAFYQKNCPDYAPDFIQTKKHEDIDYIICNNLSTLIWLGNQLAFEY
HIPFQTIDTSNPTEIVFDLDPPSKEYFHLAIKAALEMKKIFDQFQLTTFPKLSGNKGLQI
HIPISKNSLTYEETRIFTGFIAEFLVTSFPDDFTIERMKKNRGNRLYVDYIQHAEGKTII
APYSLRGKKEGAYIAAPLYWEEITPQLSVEQFTIEHVLNRVKNSGCPFKKYGESPQDDML
RSLIDQILS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttcctacattacacgcagatattccaactggttcagattggatttac
gaaacgaaatatgatggatttcgctcgatattaaccattacaaacacatccattgagtta
atgagtagaaatgaaaaatcactaaatgacaactttccagaaattataaatgaagttaaa
aaactacataaagccttcgagccatttttaccaattacattagatggagagctcgtttat
cttgaaacgccccatttttcaaactttgaattacttcaaattagaggcaggttaaaaaac
aaggaaaaaatacttcatgaggcagagaaacatccttgtcgatttctagcctttgatcta
cttgaattaaaaggtaattcattacaatcaaatacattgaaggaaagaaagtctgagttg
aaaaatctttttaaggcgttaaacctcggtactactgttgatactaaaacttctaatctt
tttcagtatgttccctgtacaaccgattattcaaccttatggcaagagatgaagttagaa
gatggtgaaggcattattgcgaagcagcataaaggtaagtgggaggcaggcgttcggacg
aagcaatggctaaaaattaagaattataaaagagcctgcttttttattactggttatgat
aaagagaatggttacttccatgttggagtttatgcaaaaaataacattattcaagcagga
gtgttttctcatggaatttccagtcaagaacgtgatgcacttctgcaaattatccgagaa
aacaaacaatcggaaactgccaattttattgagataaaaccagcaattgtggttgaatta
cagtttttatctctatataaaaatcagctaagagaaccatctttttttacatttcgattt
gattatcatgtggaagattgtacatgggatatgcttttacttaaaactgcacctattcat
caagaaatttccatcacacatccagacaaacctttatgggaaacggttgacttaaaaaag
gagacatttttaagttatttagttcaaatttctccctatatgctaccatttttacaaaat
cgattgttaactgtaatccgttttccacatggaatgtttggcgaagccttttatcaaaaa
aattgccctgactatgcacctgactttatacaaacaaaaaaacatgaggatattgattat
attatttgtaataatttatcgacattaatttggttggggaatcaattagcatttgaatat
catataccatttcaaacaatcgacactagtaacccaactgaaatcgtatttgatctagat
cctccttctaaagaatacttccacttagctattaaagctgcattagaaatgaaaaagatt
tttgaccaatttcagttaactacctttccaaaattatcaggtaataaaggattacaaatc
catataccgatttccaaaaattctcttacttatgaagaaacaagaatattcacaggtttt
attgctgaatttttggtaacaagttttcctgatgattttacgattgaacgaatgaagaaa
aatcgtgggaaccggttgtatgtggattacattcaacacgccgaaggtaaaacaattatt
gctccatattctcttcgcggtaaaaaagaaggtgcctatatcgctgcacctctatattgg
gaggaaattactccacaactttctgttgagcaatttacaatagaacatgtattaaacaga
gtaaagaactcaggttgtccgtttaaaaaatatggagaatctccacaagacgatatgcta
cgttcattaatcgatcaaatattgagctaa
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