Mustela lutreola (European mink): 131823780
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Entry
131823780 CDS
T09578
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mlk
Mustela lutreola (European mink)
Pathway
mlk03013
Nucleocytoplasmic transport
mlk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131823780 (UPF1)
03015 mRNA surveillance pathway
131823780 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlk03019
]
131823780 (UPF1)
Enzymes [BR:
mlk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131823780 (UPF1)
5.6.2.5 RNA 5'-3' helicase
131823780 (UPF1)
Messenger RNA biogenesis [BR:
mlk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131823780 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
131823780 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
131823780
NCBI-ProteinID:
XP_059016546
LinkDB
All DBs
Position
2:14615816..14838292
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgcttggcgccgacacacagggctcagagttcgagttcaccgacttcactctc
cctagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggttggcgcgggcgcgggagctgcggccggacagctagacgcgcaggtcggtgga
ccagagggcattctgcagaatggggctgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaggatacctattacactaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcagcacgtgctcctgcggtatgaggacgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggggatgagatatgtctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcatttgataggatgcagagtgcattgaaa
acgttcgctgtggatgagacgtccgtctcgggctacatctaccataagctgctcgggcat
gaggtggaggacgtgatcatcaagtgccagctgcccaaacgcttcacggcacaggggctc
cccgacctcaaccactcccaggtttatgctgtcaagactgtgctgcagagaccgctgagt
ttgatccagggaccaccaggcacagggaagacagtgacctctgccaccatcgtctaccat
ctcgcgcggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggac
cagctgactgagaagatccaccagactgggctgaaggtcgtgcggctctgtgccaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggacgagacgggggagctgtcc
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggcttgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggcgatcactgccagctgggccct
gtggtgatgtgcaagaaagcggccaaagcgggactgtctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgccccatccgcctgcaggtccagtaccggatgcatcccgcactc
agcgccttcccttccaacatcttctacgagggctccctccagaacggcgtcactgcagcg
gaccgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgctagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagttgctgaaggcaggggccaagcccgac
cagatcggcattatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaatgtggccctgaccagagcgaggtac
ggggtcattatcgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgcgag
agcctcatgcagttcagcaagcccaggaagctcgtcaacaccatcaatccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatccccggatcggtctacgat
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcgggccccagccacgtggccgccatgaacattcccatccccttcaatctggtc
atgccccccatgccaccgccagggtacttcggacaagcaaacgggccggccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgtcagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaagacgtggcgtcgcagcca
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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