Mycolicibacterium litorale: B1R94_22725
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Entry
B1R94_22725 CDS
T05032
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mll
Mycolicibacterium litorale
Pathway
mll03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1R94_22725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mll03400
]
B1R94_22725
Enzymes [BR:
mll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1R94_22725
DNA repair and recombination proteins [BR:
mll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1R94_22725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AQT83027
LinkDB
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Position
complement(4780833..4784492)
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AA seq
1219 aa
AA seq
DB search
MTAPGHHHVQTPLAGLVDLALTAPTFAELATRAGERPSELALYGPASAQLYAACALVSDG
PLLVVTATGREADDLTAELRGVYGDSAAMFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PEDSRLGPPLRVVVTTVRSLLQPMAPDVASLEPVILQIGAELDFDDLVTRLVELAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEVSEMRMFAVADQRSIPEIDVDAVVAV
PCRELLITDDVRARAAKLTATRPADDNHVTGSVGEMLAKIAEGIPVDGMEALQPVLRPDE
LTLLTDHLPDGTPLLVCDPEKVRTRAADLIKTGREFLEASWSVAAIGGDAPIDVEQLGGS
GFRELAEVRAAATAGNHPWWTLSQLAGEHAVELDVRPAPSARGQQSTVDEIFAMLRAHVL
TGGYGVVVAPGTGTAHRVVEQLGERDIPAGMLEPGQAPKQGVVGVLKGPLHDGIVVPGAN
LVVITETDLTGNRVSATEGRRLAAKRRNTVDPLALTAGDLVVHDQHGIGKFVEMVERTVG
GARREYLVLEYASSKRGQGADKLFVPMDSLDQLSRYVGGQEPSLSRLGGSDWTNTKTKAR
KAVREIASELVALYAKRQAAPGHAFARDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV
TVKGLSRFTDPAESRAVIEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVEH
KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
AAALRRELLRDGQVFYIHNRVSSIDSAAARVRQLVPEARVVVAHGQMPEEQLERTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPK
EMPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVTTAEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAATDD
AAVNAVIEELTDRYGPLPEPAQRLVAVARLRLVCRRYGVTELAATGSGSATTLRVSPLTL
PDSAQLRLKRVYPGAAYRATTSTVQVPIPRSGGGVGAPRIRDLELVQMAADLLLALDGRP
QGELDITTFTPAGSPKGQR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaccaccatgtccagaccccgttagcggggctggttgacctggcg
ctgaccgccccgactttcgccgaactggcgacgcgtgccggcgagcgtcccagcgagctg
gcgctctacggcccggccagcgcgcagctgtatgccgcctgcgcactggtgtccgacggt
ccgctgctggtggtgaccgcgacggggcgcgaggccgacgatctcaccgcggagttgcgc
ggagtctacggtgactccgcggcgatgttcccgtcgtgggagacgctgccgcatgagcgg
ctgtcgcccggggtggacaccgtcggtgcccggctcatgctgctgcgccggctcgctcac
cccgaggactcccggctggggccaccgctgcgggtggtggtcaccacggtgcgttccctg
ctgcagccgatggcccccgatgtggccagcctggagccggtgattctgcagatcggcgcg
gaactcgacttcgacgacctggtgacccggctcgtcgagctggcctacacccgggtggac
atggtcggcaagcgcggcgagttcgccgtccgcggtggcatcctcgaccttttcccgccg
accgccgagcacccggtgcgggtggagttctggggtgacgaggtcagcgagatgcggatg
ttcgcggtcgccgaccagcggtcgattcccgagatcgacgtcgacgcggtggtggccgtg
ccgtgccgcgaactgctgatcaccgacgacgtgcgggcccgggccgccaagctcaccgcg
acccggccggccgacgacaaccacgtcaccggcagcgtcggggagatgctggccaagatc
gccgagggcatcccggtcgacggcatggaggcgttgcagccggtgctgcggcccgacgag
ctgaccttgctgaccgaccacctgccggacggcaccccgctgctggtgtgcgacccggag
aaggtgcgcacccgggccgccgacctgatcaagacgggtcgggagttcctggaagcgtcg
tggtcggtggcggcgatcggcggtgacgccccgatcgacgtcgaacaactcggtggatcg
ggtttccgtgagctcgccgaggtgcgggccgccgccaccgcgggcaaccacccatggtgg
acgctgagccagctggccggcgagcacgccgtcgagctcgacgttcgacccgcaccgtcg
gcgcggggccagcagagcaccgtcgacgagatcttcgcgatgctgcgcgcccacgtcctg
accggcggttacggcgtcgtcgtcgctcctggcacgggtaccgcccaccgagtggtcgag
cagctcggcgagcgggacatcccggccgggatgctcgaacccggtcaagcccccaagcag
ggggtggtcggcgtgctcaagggaccgctgcacgacggcatcgtggtgcctggggccaac
ctcgtggtgatcaccgagaccgacctcaccggtaaccgggtgagcgccaccgaaggcagg
aggctggccgccaaacgccgcaacaccgtcgacccgctggccctgaccgccggcgatctg
gtggtccacgaccagcatggaatcggcaagttcgtcgagatggtggagcgcaccgtgggc
ggcgcgcgccgcgagtacctggtgctggagtacgcgtcgagcaaacgaggccagggtgcc
gacaagctcttcgtgccgatggactccctggatcagctctcgcggtacgtgggcggccag
gaacccagtctgagccggctcggcggaagtgactggaccaacacgaaaaccaaggcgcgc
aaggctgttcgtgagatcgccagtgagttggttgccctctacgccaagcggcaggcggca
ccggggcatgcgttcgcccgggacaccccgtggcaggccgagatggaggatgcgttcggt
ttcaccgaaaccatcgaccagctgacggccatccaagaggtcaaatccgatatggagaaa
ccggttccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagattgcg
gtgcgggcggcgttcaaggccgtccaggacggcaagcaggtggcggtcctggtgcccacc
accttgctggccgaccagcatctgcagactttcaccgcccggatggccggtttcccggtg
accgtgaagggcttgtcccggttcaccgatccggcggagtcgcgtgcggtcatcgagggg
atggccgacggcagcgtcgacatcgtcatcggcacccaccggctgctgcagaccggggtg
cggtggaaggacctcggcctggtgatcgtcgacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaagagtctgcgcagccacgtcgacgtcctgaccatgagtgccacgccg
atcccgcgcactttggagatgagtctggccggcatccgggagatgtcgacgatcctcacc
ccgcccgaggagcgctacccggtgctgacctacgtcggcccgcacgacgacaagcaggtc
gccgccgcgctgcgccgcgaactgctgcgtgacgggcaggtgttctacatccacaaccgg
gtcagcagtatcgattccgccgccgcgcgggtgcgccagttggtgcccgaggcgcgggtg
gtggtcgcgcacgggcagatgcccgaggaacaactcgagcgcaccgtggaaggcttctgg
aaccgcgaatacgacatcctggtgtgcaccaccatcgtcgagaccggcttggacatctcc
aacgccaacacgctgatcgtcgaacgcgccgacaccttcggcctgtcgcagctgcaccag
ctgcgcgggcgagtgggccgcagccgcgaacgcgggtacgcctacttcctgtatcccaag
gagatgccgctcaccgaaaccgcctatgaccgactggccaccatcgcgcagaacaacgag
ctgggcgccgggatggcagtcgcgttgaaggacttggagattcgtggcgccggcaatgtg
ctgggcgccgaacagtccggtcacgtcgcgggggtgggtttcgatctgtatgtgcggctg
gtgggggaggccgtcgaggcgtatcgagccgcggccgacggcaagacggtcaccactgcc
gaagagcccaaggacgtccgcatcgacctgcccgtcgacgcgcacctgccgccggactac
atcggcagtgaccggttgcggctggaggcctaccgccgactggccgcggccaccgacgac
gccgcggtgaacgcggtcatcgaagagttgaccgaccgctacggaccgctacccgagccc
gcgcagcggctggtggcggtggcacggctgcggctggtctgccgtcgctacggtgtgacg
gagctggctgcgacgggaagtggttctgccacaacgcttcgcgtgtcgccgctgacgttg
cccgactccgcccagttgcgcctcaagcgggtctatcccggcgcggcgtatcgggcgacg
acgtcgacggtgcaggtgccgatcccacggtcgggcggcggggtgggcgctccgcggatc
cgtgatctcgaattggtgcagatggccgccgacctgcttctcgcactggacgggcgtccg
cagggcgagctcgacatcaccacgttcacaccggctggttcgccgaaggggcagcgatga
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