Mesorhizobium loti NZP2037: A9174_21665
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Entry
A9174_21665 CDS
T04711
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mln
Mesorhizobium loti NZP2037
Pathway
mln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9174_21665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mln03400
]
A9174_21665
Enzymes [BR:
mln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9174_21665
DNA repair and recombination proteins [BR:
mln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A9174_21665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANN59081
LinkDB
All DBs
Position
4509113..4512610
Genome browser
AA seq
1165 aa
AA seq
DB search
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAAFEIAPDKPVLFVARDGQRLPVIIEA
LAFAAPGLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGILDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYTAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARKKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNINVFDVVVRHIADERAARRRIVIAGWTEGSLDRLGQ
ILTEHHLGNLKQVETLAQAEQLEPGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSAGDIVVHTDHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPVRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
SEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDAAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVKFIGEQGSLAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcattcccaccattggtctgccgaaaggccgtgccggccagttcatcgtcgat
ggtgtcgccgatggatacgaggcgtttgcactggtgcaggccgcattcgagatcgcgccc
gacaagccggtgctgttcgtggcgcgcgacggccagcgcctgcctgttatcatcgaggca
ctggcctttgccgcgcccggactgccggtgctggaactgccggcctgggactgtctgccc
tacgatcgcgtctcgcccggctcggatgccgccgccaagcgcctcgacgcgctgacggcc
atgatcgcgctggcgaagaagccgcatcgcgccgtcatcctcaccaccgccaatgcgctg
ctgcagcgcattccgccggctgatctggtcgaggcacagacctttcatgccaggcctggc
aaccagatcgacatgaacgcgctgattgcgcggctggaaacgtccggcttcgagcgggtg
ccgacagttcgcggcatcggcgagttcgcggtgcgcggcggcattctcgaccttttcgcg
cccggctggaccgaggcgctcaggctcgatttcttcggcgacacgctggaatcgatccgc
gtcttcgatgccgccacccagcgcaccaccggccagcgcaagtcgatggcgctgcaggcg
atgagcgaagtggcgctgacgcctgaaaccatcagccgcttccgccgctcctatatcgaa
gcctttggcgcgccgcagcgcgacgacgggctctacacggcagtcagtgagggcaggcgg
ttcgccggcatggagcattggctgccgttcttctatgagcggctggagacggtgttcgac
tatctgccggatacgcctgtggttttcgaccatctggcgcatgaggcgctggccgagcgc
cacacactgatcctcgatcactatgaagcgcgcaaaaagcaggccgatgctgcgctgaag
gatgccgtgccctacaagccggtggcgccggatctgctctacctctcgccggagaacctg
atcgcctcgctcggtccacgcgaagcgatcgacttcacgcccttcgacgcgcccgatgcc
ggcgcgaaaaaggtctatcacgccggctcgcgccatggccgcagcttcgtcgaggagcgc
gccgatccaaatatcaacgtcttcgatgtcgtcgtcaggcatatcgccgacgagcgcgcg
gcacgtcggcgtattgtcatcgccggctggacagagggttcgctcgaccggcttggccag
atcctcaccgagcatcatctgggcaatctcaagcaggtcgagacgctggcgcaagccgaa
cagctcgagccggggcaggcggcattggccgtgctgccgcttgaatccggcttcgagacc
gaaaaactggtcgtcgtcgccgaacaggatattttgggcgaccggctgatccggcgttcc
aagcgcaagaagcgcgcctccgacttcatcgcggaggcctctgcgctgtcggccggcgat
atcgtcgtccacactgaccatggcattggccgcttcatcggcctgcgcaccatcgaggcg
gtcggcgcgccgcatgactgcctggaaatccactatgccggcgatgaccggctgttcctg
ccggtcgaaaacatcgagcttctgtcgcgttatggctccgactccgccgaggcgacgctg
gacaagctgggtggcggcgcctggcagtcgcgcaaggccaagctgaagcggcgcctgctc
gacatggccgggcagctgatccgtatcgccgccgagcggcagatgcgcgccgcgccggcg
ctggtgccggccgaaggcctctatgacgaattcgccgcgcgtttcccctatgaggaaacc
gacgaccagcagacggccatcgactcggtcagggatgacctcggcgccggcaagccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaagtggcactgcgcgccgcc
ttcatcgcggcgatggaagggttccaggtcgcggtcgtggtgccgacgacgcttttgtca
cgccagcatttcaagaccttttcccagcgcttctcgggccttcccgtccgcgtcgcccag
gcctcgcggctggtcggtgccaaggaactggcggagacgaagaaggctctggccgagggg
caggtcgacatcgttgtcggcacccatgcgctgctcggctcctcgatctcgttcaagaat
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggaacggctg
aaggatctgaagaccgatgtccatgtgctgactctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgacgggcgtgcgcgaactgtcgctgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgcccttcgatccgttggtcattcgcgagacgctg
cttcgcgagcgttatcgtggcggacactccttctatgtcgtcccgcgcatcagcgatctc
tcggaaatccatgatttcctgaaagaatcggtgcccgaactgaaagtggctgtggcccat
ggccagatgccgccgggcgagctcgacgacatcatgaatgccttctacgacgggcaatac
gacgtgcttctatcgaccaccatcgtcgaatccggcctcgacattccgaccgccaacacg
ctgatcatccaccgcgccgacatgttcggcctctcgcagctctatcagttgcgcggccgc
gtcggccgctccaaggtgcgcgcctacgcgctgttcacgctgccggccaaccgcaaactg
actgacgcggccgagcgccggctgaaagtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccacgatctcgatataaggggcgccggtaatctcttgggcgaagag
cagtccggccatatcaaggaggtcggcttcgagctctaccagcagatgctggaagaggcc
gtagccgaggtgaaggattccggcgaggtccaggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgccggacctgcagctcaggctggcg
ctttaccgccgcctcggcgacctcgaaaacaccgaggagatcgacgctttcggcgccgaa
ctgatcgaccgtttcggcccgctgccggacgaggtgaagcatctcttgaagatcgtcttc
atcaaggcactctgccgcaaagccaatgtcgagaagctcgatgcgggcccgaagggcgtc
gtcattcatttccgcaagcgcgagttctccaacccggtcggcctggtcaagttcatcggc
gagcagggttcgctggccaagatccgccccgaccacagcgtcgtcttcactcgcgattgg
ccgaccgccgagaagcggctggcgggctcggcggtggtcatgacgcaactggcgcgcctt
gttgagaaggctgtttag
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