Mesorhizobium japonicum MAFF 303099: mll4606
Help
Entry
mll4606 CDS
T00043
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlo
Mesorhizobium japonicum MAFF 303099
Pathway
mlo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
mll4606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlo03400
]
mll4606
Enzymes [BR:
mlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
mll4606
DNA repair and recombination proteins [BR:
mlo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
mll4606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAB51222
RhizoBase:
mll4606
UniProt:
Q98DP8
LinkDB
All DBs
Position
complement(3654504..3656993)
Genome browser
AA seq
829 aa
AA seq
DB search
MAGLEQYHTKRDFKKTSEPAGKVARTGKNEAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWMPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGRKPEVWHSNKPAAGKAKAAARKLDFIEPQLATLERDAPPGKDWL
HEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAELAGLKCSDAIIDGEIVVLAD
SGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQAENPA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSVKGATELKTRLDALQAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIVRHASFQGLREDKPAEDVVQEKPKAATGKAKPASS
GAGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLAKLAEADPWMDFFKQGKVLKRG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacagtatcataccaagcgcgatttcaagaagacatcggagccggcg
ggcaaggtcgcacgcaccgggaaaaacgaagccgggggcatcttcgtcatccacaagcac
gcggcgaccaggctgcactacgaccttcggctcgagcatgacggcgtgctgtggagctgg
gcggtgacgcgggggcccagcctcgatccgcacgagaagcggctggccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgagtatggcggc
ggctcggtcatcgtctgggacgaggggacatggatgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggccgaaagcccgag
gtctggcattcgaacaagccggccgccggcaaggcgaaggccgcggcgcgcaaactcgac
ttcatcgaaccgcagctggcgacgctggagcgggatgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcatatcgccggcacggatgtgcgg
ctcttgacccgcaccggcctcgactggacggaaaaattcggcggcgagatcattgccgag
ctcgccgggctgaagtgcagcgacgccatcatcgacggcgagattgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatttgtcggcgaagcgggcaaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggagctgctcggcaagcaggccgagaacccggcg
gtgcgtttctccgaccattttttcgagcccggcaagatcatgctggagcatgcctgcagg
atggggctggaaggcgtcgtgtccaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaagaattcgtcatcggcggctatctg
ccgtccgacaagaccgggcgcgggctgcggtcgctgctggtcggctactacgagggcggc
aaactgcagtacgccggtcgtgtcggcaccggtttctccgtcaagggcgcgacggagctg
aagaccaggctcgacgcgctgcaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaagggcctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtatagtgcgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaaggccaagccggcctcgagc
ggcgccgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctctggccc
gacgaaaagatctccaagcagggcctgctcgaccattacgccgaggtctggccccgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccagaaacatgcctcggccggcatgagcgacagaatagcccggatgaag
gacccaacggatggcgaggagatcctgttcgtgcgggatttcgacggtgtggcggcactc
gtccagtatggcgtggtcgagatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgatcccgatgaaggcgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatataagggggaagctcgacgagctgtcgctgccgaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcggcggattgggag
gcggtgaagaccttcgcgcatgatttcgccaaggcgctcgagcagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcggaccgggaaaatcttcgtcgactatctgcgc
aatggccgcggctcgacgacggtcgcgccctattcctcgcgcgccaagaaaggggccacc
gtgtcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaatgctttccct
ataggcgacaagacgacgcttgcgaagttggcggaagccgacccgtggatggatttcttc
aagcagggcaaggtgttgaagcgggggtag
DBGET
integrated database retrieval system