Melampsora larici-populina: MELLADRAFT_118113
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Entry
MELLADRAFT_118113 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
mlr
Melampsora larici-populina
Pathway
mlr03013
Nucleocytoplasmic transport
mlr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MELLADRAFT_118113
09122 Translation
03013 Nucleocytoplasmic transport
MELLADRAFT_118113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_118113
03041 Spliceosome [BR:
mlr03041
]
MELLADRAFT_118113
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
MELLADRAFT_118113
Spliceosome [BR:
mlr03041
]
Complex C
Other components
EJC/TREX
MELLADRAFT_118113
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MELLADRAFT_118113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
18926161
NCBI-ProteinID:
XP_007416605
JGI:
Mellp1_118113
UniProt:
F4S587
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MNIQTTISLPTTPFSQFQSSLKSSLDSYLITIGNQRVDQSSQNPLTTFDPLVVIELSSAL
NVLWSQLPSLPSTALELQRSIVSSVLTSIVSQTAYPAQHSFSLPVHHQLLHDALDISLVL
IEQDRAPADLTLSCIEDILETATVEEAERIFCYLESRVDRLTVGMLPDRGKGLIFLRMQN
NLLRRLSKSLHTVFCGRILSFLSSVFPIAEKSGVNLRGAFNTGNVTHFDQDIEKKGVEAV
DSQGSETIKSDPVVETNLLKSNETTADAMIIEKSLPASQDKPIPSDEPASTDPKIQTDST
LDGENVEKSFEMKEESPEEVAARSRAKADEQEARAKAKAASKAGKLFTMATPTLLTSDKR
EFYLRFWALQSLLSNPPELFKGWQPDPNATPATVTPQSNPHTYPSSRPTSLLAPSTSLQR
ASPVREVEAAPSTANLKRLKEGINKTLDVFGRMTKKEKELGTHSKKPKIDERNLAEVKEH
YFFPKFLTKSNLLDLEVADSYFRRQVLTQFLIILKYIRGFSLEERNKRAALPKPNRVSEV
PYVYQARDDGWVRKLNGEVWKTLYATPPNGEVFALTIKQILTREQNWIMWKAGSCPSFER
PSLGDEMIKAAEANYKRIIAPPMRFPHPVGTPALSKLWSNKVTPESIESMDFSEGVPDLN
ALHGKIMAQEKQLSALKESLLAQGKSDTDVSNDPQVQAIQERKSSLSWRALRVAQTTHLQ
LFGKIGLPGSVNKLMTLIEDAKTRSNGINSTRQLATSNQMVSTPTGTVVTDATQITPGTS
GIEAESDLLSRTKDGDENSVQLVASSDNHDGQPLLDPFVQPDIVMLDGESIEDTNPVTSK
SLPASETEEEEPAPAVPANPDPAPPISIPPPLDLQPQKPQPQPQQQQQPPPPPPPPSQVN
VPHHPHVPNGPSRFNNHHHHLSRHQSPATPHSGRLHMPSHRNMQVNPIADSITDIDQVIR
RAEARAAPELARSHA
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgaacattcaaactaccatctcactcccaacaacgccattctcccaattccaatctagt
ctcaagtctagcctcgattcatacctcatcactatcggtaatcagcgtgtggatcaaagt
tcacaaaatccacttactacctttgatccacttgttgtgatcgaactctcttctgctctc
aatgtgctttggtctcaacttcctagccttccttctactgccttggaacttcagcgttca
atcgtctcatcagttctcacttccatcgttagccaaaccgcatatccggctcaacattcc
ttctcactaccagttcatcatcaattacttcacgatgctctcgacatttctttagtcttg
attgaacaggatagagcaccggctgatcttacattgagctgtatcgaagacattcttgaa
acagccacagtggaagaagctgagcggatattctgctacctcgaatctcgtgtagatcga
ttaaccgtcggaatgcttccggatcgtggaaaaggtttaattttcttaagaatgcaaaat
aatctattaagaagactatcgaaatcacttcatactgtcttttgtggaagaattttgagt
tttctttcctcggtctttccgattgctgaaaagagtggtgtcaacctgagaggagcattc
aacacgggaaatgtgacacacttcgatcaagatatcgaaaagaagggagtcgaagcggtc
gattcacaagggagcgagactatcaagtcggacccggtggtcgaaaccaatctccttaaa
tccaacgaaacaactgccgatgccatgatcatcgagaagtcactcccagcttcccaggac
aaacccatcccttcggatgaacctgcctctacagacccaaagattcagaccgactctaca
ttagacggcgaaaatgttgagaagtcttttgagatgaaggaagaatcaccagaagaagta
gcagcgagatctcgggccaaagcagatgaacaagaagcccgagccaaggcaaaagcagct
tcaaaagccggcaagttattcactatggccacacctacattattaacttccgacaagcga
gagttttatctacgtttttgggcacttcaatctctactctccaatccacccgaacttttc
aaaggatggcagcctgatcccaacgccacaccagcaacggttaccccgcagtccaaccct
catacatatccatcctctcgccctacatcgctcctggccccttcaacaagtctccagcgt
gcctcgcctgtgcgtgaggtcgaggcggcaccatcaacggccaacttgaaacgtctgaaa
gaagggatcaacaaaactctggatgtctttggtcggatgactaagaaagaaaaggaattg
ggcactcattcaaagaaacccaagatcgacgagcggaatttggccgaagtgaaagaacat
tatttctttccaaagtttctcacaaagagcaacttattggatctagaggttgcagactcc
tactttcgtagacaagttttaacccaatttctaatcattcttaaatacattcgagggttc
tctctggaggaacgaaacaagcgcgctgctttacccaaacctaatagggtcagcgaggtt
ccatacgtctatcaggctagggatgatggatgggttcggaaactgaatggcgaagtatgg
aaaacgctttatgcgactccgccgaatggcgaagtgtttgcattgactatcaagcagatc
ctgacaagggaacagaactggatcatgtggaaagctggctcatgtccaagttttgaaagg
ccaagtctaggtgatgagatgatcaaggcagctgaagccaattataaacggatcatcgca
cctcctatgcgatttccacatccagttgggactccggcgcttagtaagctttggagcaac
aaggtgactccggagagcattgagagtatggacttttcagaaggggttccggatctcaat
gcattacatggaaagatcatggcacaggagaagcaattgtcggctctcaaagaaagtctg
ttggctcaagggaaatctgatacagacgtatcgaatgatccacaggtgcaagctatccaa
gagcgaaaatcttcactttcctggagagcgttgagagttgcacagactactcatttacag
ttgtttggcaagattggtctacctggaagcgtgaataaattgatgactctgatcgaggac
gccaagacgcgctcaaatgggatcaactcaacccgacaattggcaacatcgaaccaaatg
gtttcgactcctactggaactgttgtgaccgatgcgacgcagataactccaggaacgtct
gggattgaagccgagtccgatttactttcgcgaacgaaagacggagacgagaattcggta
cagcttgtggcaagctctgataatcacgatggacaacctttgctggatccattcgttcaa
cctgatatcgtgatgctcgatggtgagagcatcgaggacacaaatccagtgactagcaaa
tctttgcccgcctccgaaactgaagaggaagagccagctcctgctgtgccagccaacccc
gatccggctccacccatctccatccccccaccactcgacttgcagcctcaaaagccacag
ccacaaccacaacagcagcagcagccgcctccccctcccccaccaccatcgcaagtcaat
gtgccccaccaccctcatgtgcctaatggtccaagtcggttcaacaatcatcatcatcat
ctctcacgccatcaatcgcctgccactcctcactctggccgacttcatatgccttcccat
cgcaatatgcaagttaacccaattgcagactcaatcacagacatagatcaagtgatcaga
agagcagaagcaagagcagcgcctgaactagctcgatcacatgcatag
DBGET
integrated database retrieval system