Allomuricauda lutaonensis: VC82_1663
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Entry
VC82_1663 CDS
T03884
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlt
Allomuricauda lutaonensis
Pathway
mlt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VC82_1663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlt03400
]
VC82_1663
Enzymes [BR:
mlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VC82_1663
DNA repair and recombination proteins [BR:
mlt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VC82_1663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
AAA_31
Motif
Other DBs
NCBI-ProteinID:
AKA35276
UniProt:
A0A0D5YTS3
LinkDB
All DBs
Position
complement(1761342..1764824)
Genome browser
AA seq
1160 aa
AA seq
DB search
MHRSLPHTTFAPKFFGLTKSSILTLFEQSPQLRKLQDTIAHSEPLDKVYTERNRSARGDI
IPVKGLVGSSVSFAVAQAFKTAERPFLVLLNDKEEAAYHLNDLELLLGDKDVLFYPGSYR
RPYQIEETDNANVLLRAEVLNRINSRKKPAVIVTYPDALFEKVVTRKELEKNTLNIKLGD
NLSLDFLNETLFEYEFKRVDFVTEPGEFSVRGGIVDVFSFSHDEPYRIEFFGDDVDSIRT
FDVETQLSTDQVKKITIIPNVENKFLQENRESFLKYIKPDTVIFAKNLSLAYGRIDSFFE
KAKEEFSKLSKEIKHSQPQELFVTSTLLKNQLQDFTVVELGGENLKQVQGDEISFRTKPQ
PAFNKKFDLLIQDLNEKHEAGYTNYIFCSTEQQAERFHDIFDSMNEEAPQTQSRGIHYQT
VVFPLYKGFIEQDLKIACYSDHQIFERYHKFHLKNGYAKKQAITLKELNKLEIGDYVTHI
DHGIGKFGGLQKIEVEGKQQEAIKLIYGDRDILYVSIHSLHKISKYNGKDGAVPKIYKLG
SAAWKKLKQKTKSRVKKIAFDLIKVYAKRRLEKGFQYGPDSYLQHELEASFLYEDTPDQA
KATEDVKKDMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHN
KTFKERLADMPVTVDYLNRFRTAKEKRDILERLQQGKIDIIIGTHQLVNKNVKFKDLGLL
IVDEEQKFGVSVKDKLKSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPI
ESQVIRFNEATIRDAISYEIQRGGQVFFIHNRIENIKEVAGMVQRLVPDAKIGIGHGQME
GKKLEQLMLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRS
NKKAFCYFITPPYEVMTPDARKRIEALEQFTELGSGFHIAMKDLEIRGAGDLLGGEQSGF
INEIGFETYQKILSEAIEELKENEFKELYDEVEGDRPKTYVKDLQLDTDFELLFPDDYIN
NITERLSLYTELNQVTDEEGLQHFEAKLVDRFGELPPQAVDLLNSVRIKWIATSIGLEKV
VLKKKKFIGYFIADQQSDFYQSHTFTHVLQYVQSHPQQCKLKEKQTRNGLRLLLVFEGIT
NVEKALQALEPLHKQSAVAP
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttgcatcgctccctccctcatactacctttgcaccaaagttttttggattgaccaaatcg
tccattctaaccctttttgaacagtctccgcaacttcggaaactgcaggacaccattgcc
cactccgaacctctggacaaagtttatactgagcgaaaccgaagtgctcgaggcgacata
attcccgtaaaaggcttggtcggctcctcggtatcttttgccgtagcccaggctttcaaa
accgccgaacggccctttttggtgcttttgaacgacaaagaagaagccgcctatcacctc
aacgaccttgaattgttgttgggcgacaaagatgtgctcttttatcccggcagttaccgc
aggccctaccaaatcgaagaaacagacaatgccaatgtactcctaagggccgaggtactg
aaccgtatcaattcccgaaaaaaacctgcggtcattgttacctatcccgatgcgctgttc
gaaaaggtggtgacccgcaaagagcttgaaaaaaatacgctcaacatcaagttgggcgat
aatctttcgcttgatttcttgaacgagaccttgttcgagtatgagttcaagcgtgttgat
tttgtcaccgagcccggggagttctcggtacgtggggggattgttgatgtcttttccttt
tcacatgacgaaccgtaccgcattgagttttttggcgatgacgtggacagcatacgaact
tttgatgtggaaacacagctttccactgatcaggtaaagaaaattaccatcattccgaat
gtagagaacaagtttttacaggaaaaccgcgaaagttttctaaaatacatcaaacccgat
accgtcatctttgccaagaacctgtcgttggcctatgggcgcatcgattccttctttgaa
aaggctaaggaggaattttcaaagttgagcaaagaaatcaaacattcgcaaccacaagaa
ttgttcgtgacttccacgttgttaaaaaatcagttgcaggattttacagtggttgaatta
gggggtgagaacctgaaacaagttcagggtgacgaaatttcattccgcaccaaaccccaa
cctgctttcaacaaaaaattcgacctgctcattcaagacctgaacgaaaagcacgaagca
ggctataccaattacatcttttgttcgacagaacagcaggcagagcgtttccatgatatt
ttcgattcaatgaacgaagaagcgcctcaaacgcagtcgagaggcatccattaccagacc
gtggtctttcctctttacaaagggttcatcgaacaagatttaaaaattgcctgttattcc
gatcaccagatttttgagcgctaccacaaattccaccttaaaaatggctatgccaaaaag
caggccatcacactcaaagagctcaacaaacttgaaatcggcgactatgtgacccacatc
gaccacggtatcggcaagttcggcggattgcaaaaaatagaggtcgagggcaaacaacag
gaggctatcaaactcatctacggcgaccgcgatattctgtatgtgagcatccactcactg
cacaaaatatcgaaatacaacggtaaagatggtgctgtgcccaagatttacaagttgggg
tccgcagcatggaaaaagctcaaacaaaagaccaaaagccgcgtcaaaaaaattgccttt
gaccttatcaaggtctatgctaaacgccgtttagagaaaggtttccagtatgggcccgat
agttacctgcagcacgagttggaagcttcttttctctacgaggataccccagaccaggcc
aaggccactgaagatgtaaaaaaagacatggagagtgaacgcccaatggaccgcctcatt
tgcggcgatgtgggctttggcaagacagaggtggccattcgcgctgcttttaaggccgtt
gacaatggcaaacaggttgctgtactggtgcccactaccattttggcctttcagcacaac
aagacctttaaagaacgcttggcagatatgcccgtgacggtcgattacctaaaccgcttt
cgtaccgccaaagaaaagcgtgatattttagagcggttgcagcagggcaaaatagacatc
atcatcggcacccaccaactggtgaacaaaaacgtgaagttcaaagaccttgggttgctc
attgttgatgaggaacaaaaatttggggtgtccgtaaaagacaagttgaagtccataaag
gaaaatgtcgatgtgcttacgttgacggcaacgccgattccacgtaccttgcagttcagc
ctgatggccgcccgtgacctctcggtcatcaatacgccgccaccgaaccgttaccctatc
gaaagccaggtgatacgcttcaacgaagcgaccattcgtgatgccatttcgtatgagata
cagcgtggcggacaggtgttctttatccacaaccgaatcgagaacatcaaagaagtagcg
ggcatggtacaacgcttggtgcccgatgccaaaataggtatcggccacgggcaaatggaa
ggcaaaaaattggaacaattgatgcttgcctttatgaacggcgaattcgatgtgttggtt
tccacaaccattgtggaaagtggattggatgtgaccaatgccaacaccatttttataaac
aatgccaacaattttgggctcagcgacctgcaccagatgcggggccgcgtggggcgaagc
aacaaaaaggcattctgctattttattaccccgccctatgaagtgatgacccccgatgcc
cgaaagcgcatcgaagcgcttgaacagtttaccgaactgggcagtggcttccatatcgcc
atgaaagacctcgagatccgcggcgcaggcgatttgttgggtggcgagcaaagtggtttc
atcaacgaaatcgggttcgagacctaccaaaaaatattgagtgaggccattgaggagcta
aaggaaaatgaattcaaggaactctatgacgaagtcgaaggcgaccgacccaagacctat
gtcaaagacctacagcttgacaccgactttgagttgctcttccccgatgattatatcaac
aacatcaccgaacggctgagcctttatacagaattgaaccaagttacggatgaggaaggc
ctgcaacacttcgaggccaaactggtggaccggtttggcgaactgcccccacaagcggtc
gatttgttgaattcagtgcgcatcaagtggatcgccacgagtatcgggcttgaaaaagtg
gtcttgaaaaagaaaaaattcatcggctatttcattgccgaccagcaatcagacttttac
caaagccacacttttacccatgtgcttcagtacgtgcaaagccatccccagcaatgcaaa
ctcaaagaaaaacagacccgtaacggactgcggctgctattggtttttgaaggcattacg
aatgtggaaaaggccctgcaggctttggagccgctccataagcaaagcgcagtggcgcca
tag
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