Martelella lutilitoris: JET14_09740
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Entry
JET14_09740 CDS
T07693
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlut
Martelella lutilitoris
Pathway
mlut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JET14_09740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlut03400
]
JET14_09740 (mfd)
Enzymes [BR:
mlut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JET14_09740 (mfd)
DNA repair and recombination proteins [BR:
mlut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JET14_09740 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
RecG_dom3_C
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
QQM32388
UniProt:
A0A7T7KNB2
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All DBs
Position
2062144..2065650
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AA seq
1168 aa
AA seq
DB search
MIAGFNPKKLDGLSGAVTIANAVPGTEPLVLAEMARAGQSVAYVLSDGQRIGDFEQMLGF
AAPDIPVLTLPAWDCLPYDRVSPGADTSARRLSALSGLIAHAEKPHPAIILVTVNAMLQK
LPPREIVATLGFSARAGQVIDMDVIVRRLTDAGFERVPTVRAVGEYAVRGGILDVFVPGE
ENGLRLDFFGDTLESIRAFDAATQRTIGSVKAFTLNAMSEVTLNDENIARFRKNYLSLFG
ASTRDDALYQAVSEGRRYAGMEHWLPLFYERLETMFDYLSGFRIVFDHTAREAASERADL
IEDYYEARRTNLGAAHAGQGAPYKPVPPDMLYLDETAFVAGLEASEAVRLSPFNEASSLG
KPVIALEAHAGPRWAVAAQARRQEDGERANVFEEAVRHIADTRSKGGKVLITGWSEGSLD
RLLQVLKEHGLSKIKPVKALADLQSLAKGEAASAVLSLEGGFETGDLHVIGEQDILGDRL
IRKTRKNRKASDFITEVSGLDEGSLVVHAEHGIGRFTGLRTIEAAGAPRDCLELHYADDA
KLFLPVENIELLSRYGSDAADVPLDRLGGGAWQAKKARLKKRLLDMADELIAIAAKRATR
TAPPLVAAEGLYDEFAARFPYEETEDQYNAIEAVRGDLGLGRPMDRLICGDVGFGKTEVA
LRAAFLAAMNGVQVAVVVPTTLLARQHYKTFIERFRGLPIKVAQASRLVSAKELAQTKKD
LSEGKVDVVVGTHALLGTSIKFANLGLLIIDEEQHFGVRHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRENLMREHYRGGQSFYVCPR
LSDLEEVQAFLQAEVPELKVAVAHGQMAAGQLEDIMNAFYDGSYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKIRAFALFTLPANKRLTDTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEAKGDEDAGGSDWS
PQIGLGTSVMIPESYVPDLNLRMALYRRLGELTDAGDIDAFGAELIDRFGPMPEAVQSLL
KVVFIKSLCRTANVEKLDAGPKGIVVTFRNKEFPNPAGLVQFIAEQSVSAKIRPDQSVFF
NRDLPTPDKRLGQAAIIMNKLSKIAEAG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggatttaacccgaaaaagctggatggcctcagcggcgccgtcaccatcgcc
aatgccgtgccgggcaccgaaccgctggtgctggcggagatggcgcgcgccggccagtcg
gttgcctatgtgctctccgacggccagcggattggcgatttcgaacagatgctcggtttt
gccgcgcccgacattccggtgctgacgctgcccgcctgggactgcctgccctatgaccgc
gtttcgccgggggcggatacctccgcacggcggctttcggcgctctccggcctcatcgcc
catgccgaaaagccgcatccggcgatcatcctcgtcaccgtcaatgccatgctgcagaaa
ctgccgccgcgcgagatcgtcgcgacgctcggtttttccgcccgcgccgggcaggtgatc
gatatggacgtcatcgtccgtcggctgaccgatgcggggttcgagcgcgtgccgaccgtg
cgcgccgtcggcgaatatgcggtgcgcggcggcattctcgacgtcttcgtaccgggagaa
gagaacggcctgaggctcgatttcttcggcgacacgctggaatcaatccgcgccttcgat
gccgcgacccagcgcaccatcggctcggtcaaggccttcacgctcaacgccatgagcgag
gtgacgctgaacgacgagaacatcgcccgcttccgcaagaactacctgtcgctcttcggc
gcctcgacgcgcgacgatgcgctctaccaggccgtctcggaaggccgtcgctatgccggc
atggaacactggctgccgctgttttacgagcggctggagaccatgttcgactatctttcc
ggcttccggatcgtgttcgaccatacggcgcgcgaggccgcgagcgagcgtgctgacctg
atcgaggactattacgaggcccggcgcaccaatctgggcgccgcccatgccgggcagggc
gcgccctacaagcccgtgccgccggacatgctctatctcgacgagacggcatttgtcgcc
ggtctcgaagcaagcgaggccgtgcggctttcgcccttcaacgaggcatcctcgctcggc
aagccggtgatcgcgcttgaggcccatgccggcccgcgctgggccgttgccgcgcaggcg
cgcaggcaagaagacggcgagcgggcgaatgtgttcgaggaggccgtccggcatattgcc
gacacgcgctcgaagggcggcaaggtgctgatcaccggctggtcggagggctcgctcgat
cgtctgctgcaggtcctgaaggaacacgggctttcgaagatcaagccggtcaaggcgctt
gcggaccttcagagccttgccaagggcgaggcggcgagcgcggtcctcagtcttgagggc
ggtttcgagaccggcgacctgcatgtgatcggcgagcaggatattctcggcgaccggctg
atacgcaagaccagaaagaacaggaaagccagtgacttcatcaccgaggtttccggactg
gatgaaggatcgctggtcgttcacgccgaacacggcatcgggcggtttacgggactgaga
acgatcgaggcggcgggcgcgccgcgtgattgcctggaactgcattatgcagacgatgcc
aagctgttcctgccggtggagaacatcgagcttctgtcgcgctacggctccgatgccgcc
gacgtgccgctcgaccggcttggcggcggcgcatggcaggcgaagaaggcgcggctgaag
aagcggcttctcgacatggccgacgaactgatcgcgatcgccgccaaacgggcaacgcgc
acggcgccgcctctggtggcggccgaggggctttatgacgaattcgccgcccgctttccc
tatgaggagacggaggaccagtataacgccatcgaggcggtgcgcggcgatctcggcctc
ggacggccgatggaccgcctgatctgcggcgatgtcggcttcggcaagaccgaagtggcc
ctgcgtgcggccttcctggccgccatgaacggcgtccaggtggccgtggtggtgccgacg
acgcttctcgcgcgccagcactacaagacctttatcgaacgttttcgcggactgccgatc
aaggtcgctcaggcttcgcgcctcgtcagcgccaaggaactggcccagaccaagaaggat
ctttccgagggcaaggtcgatgtcgtggtcggcacccatgcgctcctcggcacctcgatc
aagttcgccaatctcggcctcctgatcattgacgaggagcagcatttcggcgtgcgccac
aaggagcggctgaaggagctgaagagcgacgtgcatgtgctgacgctttcggcgacgccc
attccgcgcacgcttcagcttgccatgaccggcgtgcgcgaactctcgctgatcaccacg
ccgcccgtcgaccgcatggcggtcaggaccttcatctcgcccttcgatccactggtgatc
cgcgagaacctgatgcgcgagcactatcgcggcggccagagtttttacgtctgcccgcgg
ctttccgatctggaagaggtgcaggccttcctgcaggcggaagtgccggagctgaaggtt
gccgttgcccacgggcagatggcggcgggccagctcgaggacatcatgaacgccttctac
gacggcagctatgatgttctgctgtcaacgacgatcgtggaatccggcctcgacgtaccg
acggccaacacgctgatcgtccaccgcgccgacatgttcggtctggcccagctctaccag
ttgcgcggccgcgtcggccgttcgaagattcgcgccttcgcgctgttcacgctgccggcc
aacaagcggctgaccgataccgccgagcggcggctgaaagtgctgcagtcgctcgacacg
ctcggcgccggcttccagcttgcaagccacgatctcgatattcgcggcgccggcaatctt
ctgggcgaggaacagtccggccacatcaaggaggtcggcttcgagctttaccagcagatg
ctggaagaagcggtcgccgaggccaagggcgacgaggacgcgggcggcagcgactggtcg
ccgcagatcgggctcggaacgtcggtgatgatcccggagagctatgtgccggacctgaac
cttcgaatggcgctctatcgccgccttggcgaactgaccgatgccggcgatatcgacgct
ttcggcgcggaactgatcgaccgcttcgggccgatgccggaggctgtgcagtcgcttctg
aaggtggtgttcatcaaatcgctctgccgcacggccaatgtcgagaagctcgatgccgga
ccgaagggcatcgtcgtgactttccgcaacaaggaatttccgaacccggcgggactggtg
cagttcatcgccgagcagagcgtctcggcgaagatcaggccggaccagagcgtgttcttc
aaccgcgacctgccgacgccggacaagcgcctcggccaggccgcgatcatcatgaacaag
ctatcgaagattgccgaagccggttag
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