Microbacterium lemovicicum: CVS47_01783
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Entry
CVS47_01783 CDS
T06301
Symbol
ligD_3
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlv
Microbacterium lemovicicum
Pathway
mlv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CVS47_01783 (ligD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlv03400
]
CVS47_01783 (ligD_3)
Enzymes [BR:
mlv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CVS47_01783 (ligD_3)
DNA repair and recombination proteins [BR:
mlv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CVS47_01783 (ligD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZS37152
UniProt:
A0A3Q9J086
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All DBs
Position
1879956..1882532
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AA seq
858 aa
AA seq
DB search
MAGEQLASIGGRRLRITNLDKVLYPETGTTKGEVIDYYTRVGPTMIPHVIGRPVTRKRWP
DGVGTAQHPGQSFFAKDLEPGAPSWVHRLPIPHSGGPKDYPLVGDVPTLVYLAQVASLEL
HVPQWRFTASGERGDADRLVLDLDPGPGTGLAECAEVARWAREILGHMGLDPFPVTSGSK
GIQLYSALPPGQTSEQASALAHELARAIEADHPDLVVSSMKKSVRDGRVLIDWSQNNGAK
TTIAPYSLRGRAHPNVAAPRTWDELDDADLRQLSFEEVLARIDDIGDPLSALGFHAGGRE
SDDGPLAAYISKRTAGKTPEPVPSDPAAATVDPSDLPRFVIQEHHATALHWDFRLEHDGV
LVSWAVPRGVPPTPRRNSLAIMTEDHPMDYASFEGTIPAGEYGGGSVTIWDDGRFELEKW
RDDEVIATLEGRPGGPLGRVRLALIRTKGAGEKSQWLLHRMKTDAAGRPQPDGEVVEASP
QADGRTPAAEDEPSADGPAEDARPEPVPDLPESAPEMPVDELLAQAPPLAWPPAPADLRP
MLSTTATPEWAETAARSWTGAAWAEAKWDGIRAVGVWDGESLRLWARSGNESTAKYPEIS
GAALALGSEPVILDGELVALDERGRPSFPLLQTRMNLARAGDVAREAKRTPVTYYLFDVL
AAAGRDVTRLPLTARRSILEHVARGLPETFVVPPVFDDVREALETSRRFDLEGVVVKDPA
STYRRGIRSDSWLKVKLTRTQEVVIAGIRPGQGSRASTFASLLLGIPGPDGLQYAGRVGT
GFSESTLRMLQDRLEPLRTDGTTLVGVPRADARDALWVRPELVGEVEFAEFTPGGILRHS
RWRGLRPDKSPSEVVRES
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagagcagctggcgagcatcggcggtcgccgcctgcgcatcaccaacctcgac
aaggtgctctaccccgagacgggtacgaccaaaggggaggtgatcgactactacacgcgc
gtcgggccgacgatgatcccgcacgtgatcggtcgcccggtcacccgcaagcggtggccc
gacggggtggggacggcgcagcatccggggcagtcgttcttcgcgaaggatctcgagccc
ggtgcaccgtcgtgggtccaccgcctgccgatcccgcactcgggcggcccgaaggactac
cccctggtcggcgacgtgccgaccctggtgtacctcgcacaggtggcgagtctcgagctg
cacgtgccgcagtggcgcttcaccgcctcgggcgagcgaggcgacgccgaccgcctcgtg
ctcgacctcgaccccggtccggggacgggcctggccgaatgcgcggaggtggcccgctgg
gcgcgggagatcctcgggcacatgggcttggaccccttccccgtcaccagcggcagcaag
ggcatccagctctactcggcgctgccgcccgggcagaccagcgagcaggcctccgctctg
gcccacgagctggcgcgcgcgatcgaggccgatcatcccgacctcgtcgtcagctcgatg
aagaagtcggtgcgcgacggtcgcgtgctcatcgactggagccagaacaacggcgcgaag
acgaccatcgccccctactcgctccgcggacgggcgcaccccaacgtcgccgcaccccgc
acgtgggacgagctcgacgatgccgacctccggcagctctccttcgaggaggtgctcgcc
cgcatcgacgacatcggcgacccgctctcagcgctcgggttccacgccggcggccgcgag
tcggacgacggccccctcgccgcctacatctccaagcgcacggcgggcaagacgccggag
cccgtgccgtcggaccccgcggccgcgaccgtcgatccgtccgacctgccgcgcttcgtg
atccaggagcaccacgcgaccgcactgcactgggacttccgcctcgagcacgacggcgtc
ctcgtgagctgggcggtgccccgcggcgtgccgccgacgccgcgtcgcaacagcctggcc
atcatgaccgaggaccacccgatggactacgcctcgttcgagggcacgatccccgcgggc
gagtacggcggggggtcggtcacgatctgggacgacgggcgcttcgagctcgagaagtgg
cgcgacgacgaggtcatcgcgaccctcgagggccgccccggcggtccgctcggccgcgtg
cgtctcgccctcatccgcacgaagggcgcgggcgagaagtcgcagtggcttctgcaccgg
atgaagacggatgctgcgggccgccctcagccggacggcgaggtcgtcgaggcgtcaccg
caggcggacggcaggactccggcggccgaagacgagccctccgctgacggacctgccgag
gacgcgcgaccggaacctgtgcccgaccttcccgagtccgcccccgagatgccggtcgac
gagctcctcgcgcaggctcccccgctcgcctggccgcccgccccggcggacctgcggccg
atgctgtcgaccaccgccacccccgagtgggcggagaccgccgcgcggtcgtggaccggc
gccgcgtgggcggaggcgaagtgggacggcatccgtgccgtcggggtgtgggacggcgag
agcctccgcctctgggcgcgcagcggcaacgagtcgacggcgaagtaccccgagatcagc
ggcgcggctctcgcgctcggttccgagcccgtgatcctcgacggcgagctcgtggccctc
gacgagcgcggccgcccgagcttcccgctcctgcagacccgcatgaacctggcgcgtgcc
ggagatgtcgcccgcgaggcgaagcggacgcccgtcacctactacctcttcgacgtcctg
gccgccgcgggccgcgacgtgacccgccttccgctgacggcgcgccgcagcatcctggag
cacgtcgcacggggcctccccgagaccttcgtggtcccgccggtgttcgacgacgtccgc
gaggcgctggagaccagccgccggttcgacctcgagggcgtcgtggtgaaggatcccgcg
tcgacgtatcgccgcggcatccgctcggactcctggctcaaggtgaagctgacgcgcaca
caggaggtcgtgatcgccggcatccgaccggggcagggcagccgcgcgtcgacgttcgcg
tcgttgctgctcggcattccggggccggacggactgcagtacgcggggcgtgtgggcacc
ggcttcagcgagagcacgctgcgcatgctgcaggaccgcctcgaaccgctgcggaccgac
ggcacgacgctcgtcggcgtgccgcgcgccgacgcgcgcgacgcgctgtgggtgcggccc
gagctcgtcggcgaggtcgagttcgcggagttcacgcccggcggcatcctccggcactcc
cggtggcgcggactgcgtcccgacaagtcgccgtccgaggtcgtgcgcgagagctga
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