Mirounga leonina (Southern elephant seal): 118004323
Help
Entry
118004323 CDS
T07472
Symbol
PCF11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118004323 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlx03021
]
118004323 (PCF11)
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118004323 (PCF11)
Transcription machinery [BR:
mlx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118004323 (PCF11)
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118004323 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
118004323
NCBI-ProteinID:
XP_034851535
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTIMEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QTGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctagagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaggacttgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaaggttaaagaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggctggaagtagaaataaaatcatcaatggcattgtacaaaaacaggataca
ataatggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacttcgacacccaaagctgga
aagattcggcaatcaggagttaagcagtcacacatggaagagtttacgctaccttccagg
gaagagcgaaatgctaagagaagtaataaacaagatattcgagatccaaggagaataaaa
aagactgaagaggaacgaccacaagaagctgcaaatcagcattctacaaagtcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttctaagtctaccaaacgatggaaatcc
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaaccttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagtcca
gcatcaagatttgccggccttgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggccca
caaggtcagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgagatttgaaggaccgggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacccgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgttggtggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagccggtttgaggttt
gaaggacaacataatcagcttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggataaggtttgaaggaccattagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattgcatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacagaggcttgaatcagtatctttcaat
cagactggtccatataatgatccacctggcaatgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagcttctccaatccccttaacagagcttctggacactatttt
gatgaaaagaatcttcagagttcccaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttcttactggtgttgctcagccggtagca
tttggccaaggacaacagtttttgccagttcatccacaaaatcctggagcatttgttcag
aatccttcaggagctcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtctcagcctgattca
gctacaacacaagtaaatgaagttgctgctcagcctccccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatgagg
tttacaacatcacagacagatgtatatgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacg
gactggatagaatttgaggaaatagctgatttagaagaacgtgcaaagagccagtttttt
gaaaaggtgcacgaagaagtcgtgctcaagactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacag
tttgaacaatattgggatgaagaagaggaggaatggcatttaaaaaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcagaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaacgaattacaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaat
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
