Mirounga leonina (Southern elephant seal): 118005640
Help
Entry
118005640 CDS
T07472
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03013
Nucleocytoplasmic transport
mlx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118005640 (UPF1)
03015 mRNA surveillance pathway
118005640 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118005640 (UPF1)
Enzymes [BR:
mlx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118005640 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118005640 (UPF1)
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118005640 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118005640 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118005640
NCBI-ProteinID:
XP_034853513
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGSAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgactttaccctc
cccagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtcggcgcgggcgcgggttctgcggccggacagctggacgcgcaggttggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaagaagatacttactacacgaaggatctccct
gtgcatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgctacaactgtggctgccgaaatgtcttcctccttggcttcatccctgcc
aaggccgactcggtggtggtgctgctgtgcaggcagccctgcgccagtcaaagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgttgcttcctc
tcctggctggtcaagatcccttctgagcaagagcagctgcgggcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaacccttctgccaccttggaggac
ctggagaagccaggcgtggacgaggagccgcagcacgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcccgtggaggtgactcacaac
ttccaggtggatttcgtgtggaagtcaacctcgtttgataggatgcagagcgcgctgaaa
acgtttgctgtggatgagacctctgtctcgggctacatctaccacaagctgctcgggcac
gaggtggaggatgtgatcatcaagtgccagctgccgaagcgcttcacggcacaggggctc
cctgacctcaaccattcgcaggtttacgctgtcaagactgtgctgcagagaccgctgagc
ctgatccagggaccaccaggcacggggaagacggtgacctctgccaccatcgtctaccac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgcgaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaatatg
gatagcatgccggagctgcagaagttacagcagctgaaggacgagacgggggagctgtcc
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaagatg
cagttccgttccattttaattgatgagagcacccaggccaccgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggtgaccactgtcagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccggactatctcagtcactcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcaccctgcgctc
agcgccttcccatccaacatcttctacgagggctctctccagaatggcgtcacggcagcg
gaccgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaagaggagatcgctagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagttgttgaaggcgggcgccaagcctgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagcgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcggatttttaaacgaccccaggcgacttaatgtggccctgaccagagcgaggtat
ggggtcattattgtgggcaacccaaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatccgtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcaggccccagccatgtggccgccatgaacattcccatccccttcaaccttgtc
atgccccccatgcccccaccagggtattttggacaagcgaacgggccagcagcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggacgtggcgtcccagcca
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagatcgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
