Micrococcus lylae: CJ228_001360
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Entry
CJ228_001360 CDS
T09111
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mly
Micrococcus lylae
Pathway
mly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ228_001360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mly03019
]
CJ228_001360
Messenger RNA biogenesis [BR:
mly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ228_001360
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF1732
Motif
Other DBs
NCBI-ProteinID:
WIK82501
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Position
301585..303270
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AA seq
561 aa
AA seq
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MPSGARLQTPPKLKKGALRIVQLGGLEEVGRNMVTFEIDGKILVVDCGVLFPEDTQPGVD
LILPDFSYLKDRLEDIVGIVLTHGHEDHIGAVPYLLRLKSDIPLIGSQLTLALIEAKLEE
HRIKPLTLAVKEGDTERFGPFECEFVAVNHSIPDALAVFVRTAAGTILHTGDFKMDQLPL
DGRITDLRAFARLGEEGVDLFMTDSTNAEVPGFTMTEKEIGPTIERYFADARQRIVVASF
SSHVHRVQQVLDAAAKHGRKVAFVGRSMIRNMGIASKLGYLDVPEGLLIDARKVDKYRDD
EVVLMCTGSQGEPMAALSRMANGDHQVQLEEGDLVVLASSLIPGNENSVFRIINALMKLG
VQVVHKGMAKVHVSGHASEGELLYSYNIVKPRHVMPVHGETRHLIANGRIAQKTGVPEEN
IVLAANGTVVDMADGRVRAVGEIDCGYVYVDGSSIGEISDADLKDRMVLGEEGFVSVITV
VNRQSGKIISGPDIHVRGVAEDAKVFEGIKPKIARALEEAVQSEKTHTTHQLQQVVRRTI
GTWINRKLRRRPMIVPVVIEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccctcaggcgcacgcctgcagaccccgcccaagctcaagaagggcgcacttaggatc
gtgcagctcggaggtctcgaagaggtcggccgcaacatggtcaccttcgagatcgacggc
aagatcctcgtcgtcgactgcggcgtcctcttccccgaggacacccagcccggcgtcgac
ctgatcctcccggacttctcctacctgaaggaccggctggaggacatcgtgggcatcgtg
ctcacccacggccacgaggaccacatcggtgccgtgccgtacctgctgcggctcaagtcc
gacatcccgctgatcggctcccagctcaccctcgccctgatcgaggccaagctcgaggag
caccgcatcaagccgctcaccctcgccgtgaaggagggggacaccgagcggttcggcccc
ttcgagtgcgagttcgtggccgtcaaccactccatcccggacgcgctcgccgtgttcgtc
cgcaccgccgcgggcaccatcctgcacaccggcgacttcaagatggaccagctgccgctc
gacggccgcatcacggacctgcgcgccttcgcccggctgggcgaggagggcgtggacctg
ttcatgacggactccaccaacgcggaggtcccgggcttcaccatgaccgagaaggagatc
ggcccgaccatcgagcgctacttcgcggacgcgaggcagcggatcgtggtggcctccttc
tcctcgcacgtgcaccgtgtgcagcaggtcctggacgcggccgcgaagcacggccgcaag
gtcgccttcgtcggccgctcgatgatccgcaacatgggcatcgcctcgaagctcggctac
ctggacgtgcccgagggcctgctcatcgacgcccgcaaggtggacaagtaccgggacgac
gaggtcgtgctgatgtgcaccggctcccagggcgagccgatggccgccctgtcccgcatg
gccaacggcgaccaccaggtccagctggaggagggcgacctcgtggtcctcgcctcctcg
ctgatcccgggcaacgagaactccgtcttccgcatcatcaacgccctcatgaagctgggc
gtgcaggtggtgcacaagggcatggccaaggtgcacgtctccggccacgcctccgagggc
gagctgctctacagctacaacatcgtcaagccgcgccacgtcatgccggtgcacggcgag
acccgccacctgatcgccaacggccgcatcgcgcagaagaccggcgtgccggaggagaac
atcgtcctggccgccaacggcaccgtggtggacatggcggacggccgcgtccgcgccgtc
ggcgagatcgactgcggctacgtctacgtggacggctcctcgatcggcgagatctcggac
gcggacctgaaggaccgcatggtgctcggcgaggagggcttcgtctccgtcatcaccgtg
gtgaaccgccagtccggcaagatcatctccggcccggacatccacgtccgcggcgtggcc
gaggacgccaaggtgttcgaaggcatcaagcccaagatcgcccgcgcgctcgaggaggcc
gtgcagtccgagaagacgcacaccacccaccagctgcagcaggtcgtccgccgcaccatc
ggcacctggatcaaccgcaagctgcgccgccgcccgatgatcgtcccggtggtcatcgag
gcctga
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