Microbacterium lushaniae: F6J85_10700
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Entry
F6J85_10700 CDS
T07230
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlz
Microbacterium lushaniae
Pathway
mlz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F6J85_10700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlz03400
]
F6J85_10700
Enzymes [BR:
mlz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F6J85_10700
DNA repair and recombination proteins [BR:
mlz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F6J85_10700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEW03522
UniProt:
A0A5J6L5A7
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All DBs
Position
2234519..2237113
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AA seq
864 aa
AA seq
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MAAGEQTVRIEGRRLRITNLDKVLYPETGTTKGEVIAYYTRIAPVLIPHVTGRPVTRKRW
PDGVGTEDDPGMSFFAKDLEAGAPSWVQRRAIPHSSGPKDYPLVGDVPTLVYLAQVASLE
LHVPQWRFTPDGERGNPDRLVLDLDPGPGVGLAECAEVARQARAILTDMGMEPYPVTSGS
KGIHLYAPLPGEQSSDAITAFAKELARAIEADSPDLVVSQMAKSARPGKVFIDWSQNNGA
KTTIAPFSLRGRAHPTVAAPRTWDELDDPELRHLLFSEVLERAEASGDPMAALGFTAGAR
AAEEGPLGQYIAKRTAGATPEPVPANPAGTTASGGLPRFVIQEHHATRLHWDLRLERDGV
LASWAVPKGVPATTARNNLAVQTEDHPMEYATFAGTIPAGQYGAGSMTIWDEGRYELEKW
RDDEVIFTLEGRPGGPLGRVRLALIRTDGSGEKSTWLLHRMKTDAAGHPQSDGAPVVPTD
ADDAPRAPTHEPTAPVVPIDADDPAPPAPADDAADPPATGADDADPPEPGGDAATIPPRA
GLRPMLATTATPAIARQAARRWSGEGDAWVEAKWDGIRAIGVWDGQRLHLRARSGNDITA
KYPELTTVDLGLGPGSAVIDGEIVALDGQGRPSFPLLQTRMNLAKPREIAREAPRTPVKL
FLFDLLARGGRDLASRALRERRRALEEFAASASGPLVLPPVFDDVDAALAASGSLGLEGI
VVKDPASPYRRGERSEQWLKVKLTRTQEVVIGGVRPGKGGRSGTIGSLLLGVPGDDGLHY
AGRVGSGFSEATLAHLEAQLTPRRTDENPFVDVPRADASDALWVRPDLVGEVEFAEFTPG
GILRHARWRGLRPDKAPDEVVRES
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgggtgaacagacggtgcgcatcgaagggcggcgactgcgcatcacgaacctc
gacaaggtgctctaccccgagaccggcaccacaaagggcgaggtcatcgcgtactacacc
cgcatcgcccccgtactcatcccgcacgtgacggggcgcccggtcacgcgcaagcgctgg
cccgacggcgtgggcacggaggatgacccgggcatgtcgttcttcgcgaaggatctggaa
gccggtgcaccgtcgtgggtgcagcgccgagcgatcccgcactcctccggccccaaggac
tatccgctcgtgggggacgtgcccaccctcgtctacctcgcccaggtggcgagcctcgaa
ctgcacgtgccgcagtggcggttcacccccgacggggagcgcggcaatcccgaccggctc
gtgctcgacctcgaccccgggcccggcgtcgggctcgccgagtgcgcggaggtggcccgc
caggcgcgcgccatcctcaccgacatgggcatggagccctacccggtcaccagcggcagc
aagggcatccacctgtacgcgccgctgcccggtgagcagtcgagcgacgcgatcacggcg
ttcgcgaaggagctggcccgcgcgatcgaggcggactcccccgacctcgtcgtcagccag
atggccaagtccgcccgcccggggaaggtcttcatcgactggagtcagaacaacggcgcc
aagaccacgatcgcgccgttctcgctgcgcgggcgcgcccaccccaccgtcgccgcgccc
cgcacgtgggacgagctcgacgacccggagctgcgccacctcctgttctccgaggtgctg
gagcgggcggaggcctccggcgacccgatggccgcactgggattcaccgccggcgcgcgc
gccgcggaggagggtcccctgggtcagtacatcgccaagcgcaccgccggcgccacgccc
gagccggtgccggccaaccccgccggcaccacggcatccgggggcctgccgcgcttcgtg
atccaggagcaccacgccacccgcctgcactgggacctgcgcctggagcgcgacggggtg
ctggccagctgggccgtccccaagggcgttcccgccacgaccgcgcgaaacaacctggcg
gtgcagaccgaagaccacccgatggagtacgcgacgttcgccggcacgatccctgccggt
cagtacggcgcgggctccatgacgatctgggacgagggccgctacgagctggagaagtgg
cgcgacgacgaggtcatcttcaccctcgaagggcgcccgggcggtccgctcgggcgcgtc
cgcctcgccctcatccgcaccgacggcagcggcgagaagtcgacgtggctgctgcaccgg
atgaagacggatgccgcgggccatccgcagtccgacggcgcgcccgtcgtccccaccgac
gccgacgacgccccgcgggcacccacccacgagccgaccgcgcccgtggtccccatcgat
gccgacgaccccgccccgcccgcccccgccgacgacgccgccgatccgcccgccaccggt
gcggacgacgccgatccgccggagcccggcggcgacgccgccacgatcccgccgcgcgcc
gggctgcggccgatgctcgccaccacggcgaccccggcgatcgcgcgccaggccgcgcgg
cgctggtccggcgaaggtgacgcgtgggtggaggcgaagtgggacggcatccgtgcgatc
ggggtgtgggacgggcagcgactgcacctgcgcgcccgcagcggcaacgacatcaccgcg
aagtaccccgagctgaccaccgtcgacctgggtctcggccccggctccgcggtgatcgac
ggtgagatcgtcgccctggacggccagggtcggccgagtttcccgctgctgcagacccgc
atgaacctcgccaagccccgagagatcgcccgcgaggcaccgcgcaccccggtgaagctc
ttcctcttcgatctcctcgcccgtggcgggcgggatctggcgtcccgagcgctccgcgaa
cgccgtcgcgccctggaggagttcgccgcctccgcatccgggccgctcgtgctccccccg
gtgttcgacgacgtcgacgccgcgctcgcggccagcggcagtctgggtctggagggaatc
gtcgtgaaagaccctgcgtcgccgtaccggcgcggcgagcgctcggagcaatggctcaag
gtcaagctcacgcgcacgcaggaggtcgtcatcggcggcgtccgccccggcaagggcggg
cgcagcggcacgatcggctccctcctgctgggcgtgcccggcgacgacggcctgcactac
gccggccgcgtcgggtcgggcttcagcgaggccaccctcgcgcacctggaggctcagctg
actccgcgccgcacagacgagaacccgttcgtcgacgtgccgcgcgccgacgccagcgac
gcactgtgggtgcgacccgatctcgtcggcgaggtggagttcgccgagttcacccccggc
ggcatcctgcgccacgcccgctggcggggcctgcggcccgacaaggcgccggacgaggtc
gtcagggagtcgtga
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