KEGG   Microbacterium lushaniae: F6J85_10700
Entry
F6J85_10700       CDS       T07230                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlz  Microbacterium lushaniae
Pathway
mlz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mlz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F6J85_10700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlz03400]
    F6J85_10700
Enzymes [BR:mlz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F6J85_10700
DNA repair and recombination proteins [BR:mlz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F6J85_10700
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QEW03522
UniProt: A0A5J6L5A7
LinkDB
Position
2234519..2237113
AA seq 864 aa
MAAGEQTVRIEGRRLRITNLDKVLYPETGTTKGEVIAYYTRIAPVLIPHVTGRPVTRKRW
PDGVGTEDDPGMSFFAKDLEAGAPSWVQRRAIPHSSGPKDYPLVGDVPTLVYLAQVASLE
LHVPQWRFTPDGERGNPDRLVLDLDPGPGVGLAECAEVARQARAILTDMGMEPYPVTSGS
KGIHLYAPLPGEQSSDAITAFAKELARAIEADSPDLVVSQMAKSARPGKVFIDWSQNNGA
KTTIAPFSLRGRAHPTVAAPRTWDELDDPELRHLLFSEVLERAEASGDPMAALGFTAGAR
AAEEGPLGQYIAKRTAGATPEPVPANPAGTTASGGLPRFVIQEHHATRLHWDLRLERDGV
LASWAVPKGVPATTARNNLAVQTEDHPMEYATFAGTIPAGQYGAGSMTIWDEGRYELEKW
RDDEVIFTLEGRPGGPLGRVRLALIRTDGSGEKSTWLLHRMKTDAAGHPQSDGAPVVPTD
ADDAPRAPTHEPTAPVVPIDADDPAPPAPADDAADPPATGADDADPPEPGGDAATIPPRA
GLRPMLATTATPAIARQAARRWSGEGDAWVEAKWDGIRAIGVWDGQRLHLRARSGNDITA
KYPELTTVDLGLGPGSAVIDGEIVALDGQGRPSFPLLQTRMNLAKPREIAREAPRTPVKL
FLFDLLARGGRDLASRALRERRRALEEFAASASGPLVLPPVFDDVDAALAASGSLGLEGI
VVKDPASPYRRGERSEQWLKVKLTRTQEVVIGGVRPGKGGRSGTIGSLLLGVPGDDGLHY
AGRVGSGFSEATLAHLEAQLTPRRTDENPFVDVPRADASDALWVRPDLVGEVEFAEFTPG
GILRHARWRGLRPDKAPDEVVRES
NT seq 2595 nt   +upstreamnt  +downstreamnt
atggccgcgggtgaacagacggtgcgcatcgaagggcggcgactgcgcatcacgaacctc
gacaaggtgctctaccccgagaccggcaccacaaagggcgaggtcatcgcgtactacacc
cgcatcgcccccgtactcatcccgcacgtgacggggcgcccggtcacgcgcaagcgctgg
cccgacggcgtgggcacggaggatgacccgggcatgtcgttcttcgcgaaggatctggaa
gccggtgcaccgtcgtgggtgcagcgccgagcgatcccgcactcctccggccccaaggac
tatccgctcgtgggggacgtgcccaccctcgtctacctcgcccaggtggcgagcctcgaa
ctgcacgtgccgcagtggcggttcacccccgacggggagcgcggcaatcccgaccggctc
gtgctcgacctcgaccccgggcccggcgtcgggctcgccgagtgcgcggaggtggcccgc
caggcgcgcgccatcctcaccgacatgggcatggagccctacccggtcaccagcggcagc
aagggcatccacctgtacgcgccgctgcccggtgagcagtcgagcgacgcgatcacggcg
ttcgcgaaggagctggcccgcgcgatcgaggcggactcccccgacctcgtcgtcagccag
atggccaagtccgcccgcccggggaaggtcttcatcgactggagtcagaacaacggcgcc
aagaccacgatcgcgccgttctcgctgcgcgggcgcgcccaccccaccgtcgccgcgccc
cgcacgtgggacgagctcgacgacccggagctgcgccacctcctgttctccgaggtgctg
gagcgggcggaggcctccggcgacccgatggccgcactgggattcaccgccggcgcgcgc
gccgcggaggagggtcccctgggtcagtacatcgccaagcgcaccgccggcgccacgccc
gagccggtgccggccaaccccgccggcaccacggcatccgggggcctgccgcgcttcgtg
atccaggagcaccacgccacccgcctgcactgggacctgcgcctggagcgcgacggggtg
ctggccagctgggccgtccccaagggcgttcccgccacgaccgcgcgaaacaacctggcg
gtgcagaccgaagaccacccgatggagtacgcgacgttcgccggcacgatccctgccggt
cagtacggcgcgggctccatgacgatctgggacgagggccgctacgagctggagaagtgg
cgcgacgacgaggtcatcttcaccctcgaagggcgcccgggcggtccgctcgggcgcgtc
cgcctcgccctcatccgcaccgacggcagcggcgagaagtcgacgtggctgctgcaccgg
atgaagacggatgccgcgggccatccgcagtccgacggcgcgcccgtcgtccccaccgac
gccgacgacgccccgcgggcacccacccacgagccgaccgcgcccgtggtccccatcgat
gccgacgaccccgccccgcccgcccccgccgacgacgccgccgatccgcccgccaccggt
gcggacgacgccgatccgccggagcccggcggcgacgccgccacgatcccgccgcgcgcc
gggctgcggccgatgctcgccaccacggcgaccccggcgatcgcgcgccaggccgcgcgg
cgctggtccggcgaaggtgacgcgtgggtggaggcgaagtgggacggcatccgtgcgatc
ggggtgtgggacgggcagcgactgcacctgcgcgcccgcagcggcaacgacatcaccgcg
aagtaccccgagctgaccaccgtcgacctgggtctcggccccggctccgcggtgatcgac
ggtgagatcgtcgccctggacggccagggtcggccgagtttcccgctgctgcagacccgc
atgaacctcgccaagccccgagagatcgcccgcgaggcaccgcgcaccccggtgaagctc
ttcctcttcgatctcctcgcccgtggcgggcgggatctggcgtcccgagcgctccgcgaa
cgccgtcgcgccctggaggagttcgccgcctccgcatccgggccgctcgtgctccccccg
gtgttcgacgacgtcgacgccgcgctcgcggccagcggcagtctgggtctggagggaatc
gtcgtgaaagaccctgcgtcgccgtaccggcgcggcgagcgctcggagcaatggctcaag
gtcaagctcacgcgcacgcaggaggtcgtcatcggcggcgtccgccccggcaagggcggg
cgcagcggcacgatcggctccctcctgctgggcgtgcccggcgacgacggcctgcactac
gccggccgcgtcgggtcgggcttcagcgaggccaccctcgcgcacctggaggctcagctg
actccgcgccgcacagacgagaacccgttcgtcgacgtgccgcgcgccgacgccagcgac
gcactgtgggtgcgacccgatctcgtcggcgaggtggagttcgccgagttcacccccggc
ggcatcctgcgccacgcccgctggcggggcctgcggcccgacaaggcgccggacgaggtc
gtcagggagtcgtga

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