Methanosarcina mazei Go1: MM_3289
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Entry
MM_3289 CDS
T00082
Name
(GenBank) Excinuclease ABC, subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MM_3289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mma03400
]
MM_3289
DNA repair and recombination proteins [BR:
mma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MM_3289
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MM_3289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_16
P-loop_SecA
AAA_30
ACDC
Flavi_DEAD
UB2H
DUF87
Motif
Other DBs
NCBI-ProteinID:
AAM32985
UniProt:
Q8PRZ9
LinkDB
All DBs
Position
complement(4000507..4002519)
Genome browser
AA seq
670 aa
AA seq
DB search
MKVSSQTTGELAENKFETIYDERYWESPPFKLVSDFEPKGSQPEAIEKLVDGLKKGEPFQ
TLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPAKDQYIEKDAMINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDKVHRKEILEKLIDIQFERNDLELMPGRFRVKGDTIDIIPGYFDDIIRIEL
FGDEVDRISEVDKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIQFILEELEERLPELGL
LESHRLKQRTLYDMEMIQETGSCKGIENYSRHFDHRQPGEKPFCLLDYFPDDFLLVIDES
HQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAFDNRPLKFEEFEKYMKNVIFVSATPADYE
REHSSRVVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEE
LTEFLAKNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRNSKSLIQIIGRAARNSSSRVVLYADNMTDSIKSAVQETERRRSMQIAYNEE
HGIVPTTIRKPIREKVVDITDTKHIPKTDIPNVIIELDAEMREAADRLDFERAIQVRELI
KKLEKEIKAV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttccagccagacaaccggggagttagctgaaaataagtttgaaacaatatac
gatgaacggtactgggaaagccctccttttaaacttgtttccgattttgaacccaaaggt
tcccagcctgaagcaatagaaaaacttgtggacggactgaagaaaggagagccgttccag
acccttctcggggtgacagggtcaggtaagacctatacagttgcaaatgttataaaccag
atccgaaaacctactctcgttattgcccacaataaaacccttgctgctcagttatataat
gagttcagggaattcttccctgaaaaccgcgttgaatattttgtctcatattacgattat
taccagccagagtcctatctcccagcaaaagaccagtatattgaaaaagatgcaatgata
aacccgaaaatcgaacagatgcgccttgcagccacagcttccctgatgtcaaggcaggac
gtgattgtggtggcatccgtgtcctgcatctacggtctgggaaatcctgaaaacttccag
aagatgggttttgaacttaaagttggggataaggttcacagaaaggaaatccttgagaaa
ctgatcgacatccagtttgagagaaacgaccttgaactcatgccagggcgcttcagagta
aaaggagatacaattgatatcattcccggttactttgatgacataatcaggatagaactt
ttcggggacgaggtggaccggatttccgaagtggacaagcaaaccgggcagagaaaagag
gatatggactatttcttcgtctatcctgccaggcactatgttatccctgaagaggaacag
aaaagcgcaatccagtttattcttgaagaacttgaagaacgtcttcccgaactcgggttg
cttgagtcccacaggttaaagcagcgcacgctctatgatatggaaatgatccaggaaacc
ggcagctgcaaggggatagaaaactattcaaggcattttgaccatagacagcctggagag
aagcctttctgcctgcttgactatttcccggatgacttccttctggttattgatgagagc
caccagacgattccgcagctgcacgggatgtataatggggacaggtcaaggaaaaagagc
cttgtagattacggtttcaggcttccaagtgcttttgacaacaggccccttaagtttgaa
gaatttgaaaaatacatgaaaaatgtgatctttgtctcggcaacacctgcagactacgag
cgtgaacattcttcccgggtcgtggaacagatcatccgcccgacaggccttgttgaccct
gaggttgaagtgcgtccccttgaaggccaggtcagggacgttatgcaggagatcaggaaa
atagtggagaggggagatcgcgcccttgtgaccacgcttaccaaaaagctagcagaagaa
ctaactgaattcctggcgaaaaatgagatcaaggcacgctacctgcactcggatataaag
accattgaaaggacggaaattatccgcgaactgcgcctcggcaagtttgatgtacttgtc
ggtatcaacctgctcagggaagggcttgatattcctgaagtcggcttcattggaatcctt
gatgcagacaaagaaggtttcctcaggaactcaaagagccttatccagattataggcaga
gcagcacggaactccagctcaagggtcgtcctctatgccgacaacatgaccgattccatc
aaatcagcagttcaggaaaccgagcgccgccgttcaatgcaaatagcttacaacgaagaa
cacggcattgtccctacaaccatcagaaaaccaattcgagaaaaagttgtggatatcacg
gatacaaaacatattccgaaaaccgatattccaaacgtgattatcgaactggatgcagag
atgagggaagctgctgacaggctggacttcgagcgtgcaatccaggtcagggaacttata
aagaagctggaaaaagagataaaagcagtgtga
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