KEGG   Mucilaginibacter mali: HQ865_21950
Entry
HQ865_21950       CDS       T07211                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmab  Mucilaginibacter mali
Pathway
mmab03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HQ865_21950 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmab03400]
    HQ865_21950 (ligD)
Enzymes [BR:mmab01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HQ865_21950 (ligD)
DNA repair and recombination proteins [BR:mmab03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HQ865_21950 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: QKJ32308
UniProt: A0A7D4PWC7
LinkDB
Position
complement(5188442..5190970)
AA seq 842 aa
MGLAEYVKKRDFKKTSEPKSGKSSNKTLSFVVQRHHASHLHYDFRLELDGVLKSWAVPKG
PSLNPNDKRLAMMVEDHPYDYKNFEGIIPNGNYGAGVVMIWDEGTYESLAEDRADDVKTL
RAGLESGNLKFRLKGNVLHGEFALVKLHSAEDNSWLLIKHKDQYALHEFNSEDLVPSNIK
IMRNNKDGKAKAIPKHKTLENVKDIKEEPADEVEETNAADQPKASGRHFQPMMAKLEAKV
FDHEDWIYERKLDGYRAIGYTGKKARLISRNGIDFTHQYQKVTDVLKAIKKDAVLDGELV
IEDSKGKSLFQEIQNYTGDKKGLTLKYYVFDLLSLEGHDLRDMELIKRKELLKSLSAAFP
KDGAIIYHPHIKEKGSALMKEAAKEGWEGIIGKDANSYYNSGKRSDRWLKFKITQSQETL
ICGYTAPTGSRKHFGALILGMHKGDHMVYIGNCGTGFNEDSLKELFAEMEPLKTDKKPFE
EKQHNRTKVTWLKPKLVCEVYYSEWTNDGHLRHPVFKGLRADKNADKVTMETPEKQLADE
ELITIGKKKLKLTHLNKVFWPDEGITKGELLHYYRDMAKYIVPYIKDKPMSMRRQPNGIG
DEGFFQKDTDASKLPDWIKTHKVYSESNDKNINYIIGTDEASLLYMVNLGCIEINPWLSN
YDTPENPEFIVIDLDPHDVPFTEAVEAALKVKEIFDRMETDVFIKTSGSKGLHIYCYAGG
KYDYDQAKMFAEYVAHMVNHELPKTTSIERSPAKRPKRTYVDFLQNRRGQTIACPYSVRP
KPGATVSTPLHWHEVNDKLKLSDFTIYNVMERVQKTNDPWKGLRDKKLDLKKALEVLKGM
EG
NT seq 2529 nt   +upstreamnt  +downstreamnt
atgggactggcggagtacgtaaaaaagcgtgattttaaaaaaaccagcgaaccgaagagc
gggaaaagcagcaataaaacactatcgtttgtggtgcagcgccaccatgcatcgcacctg
cattacgattttcggctggagctggatggcgtactgaaaagctgggcagtgcctaaaggc
ccttcattaaatcctaacgataagcgactggccatgatggtggaagatcatccttatgac
tataaaaacttcgagggtattatcccaaacggtaactacggtgcaggcgtggtgatgata
tgggacgagggcacgtacgaatcgctggcggaagatagggccgacgatgtgaaaaccctg
cgcgccgggttagaatcgggcaacctgaaattcaggctgaaaggaaacgtgctgcacggt
gagttcgcgttggtgaaactgcacagtgccgaggataactcctggctgctcatcaaacat
aaagaccagtacgcccttcatgaatttaacagcgaggacctggtgcccagcaatatcaag
atcatgcgcaataataaggatggcaaggcgaaagccatccccaaacataaaacgctggag
aatgtaaaggatattaaagaagagccagccgatgaggtagaagaaacgaatgcagcagac
caaccaaaagcatccggccggcattttcaacccatgatggccaagctggaagctaaagtt
ttcgaccatgaggactggatctacgagcgtaagctggacggttatcgtgccattggttat
acgggcaaaaaggcccggctgatatcgcgtaacggtattgattttacccatcaataccaa
aaggtaaccgatgtgttgaaagcgataaaaaaggacgccgttttagatggcgaactggtg
attgaggatagcaagggcaaaagtcttttccaggagatccaaaattatactggcgataaa
aaaggacttacgctgaagtattacgtgttcgacttgctgagtttagaggggcatgacctg
cgagatatggaactaattaagcgtaaggaactactgaaatcgctatcggccgccttcccc
aaagacggggctattatttatcatccgcacattaaggagaagggttcggcactgatgaag
gaagccgccaaggaaggctgggagggcatcatcggcaaggatgccaatagctattataac
agcggtaagcgcagcgataggtggctgaaatttaagatcacacaatcgcaggaaacgttg
atatgcggatataccgcgccgacaggttcgcgtaagcattttggcgcgttgatattgggg
atgcacaaaggcgatcatatggtgtacatcggcaattgcggcacgggctttaacgaggat
agtttaaaagaactttttgccgagatggagcccttgaaaaccgataagaagccgtttgaa
gaaaagcagcataaccgcacaaaggttacctggttaaaacctaagctggtttgcgaagta
tactattctgaatggaccaacgacgggcacctgcgccaccctgtatttaaaggcttgcgt
gccgataagaacgctgataaagtaactatggaaacgcctgaaaaacaactggccgatgag
gaactgatcaccatcggcaagaagaaattgaagcttacccaccttaacaaagtgttctgg
cctgatgaagggattaccaagggtgaattgctgcactattaccgagatatggctaaatat
attgtaccctatattaaggataaacccatgtccatgcgtcggcaacccaatggtattggc
gatgaagggttttttcagaaagataccgatgccagcaagctgcccgactggataaaaacg
cacaaggtgtattcggaaagtaatgataaaaatatcaactacattattggtaccgacgaa
gcaagtttactgtatatggttaatttgggttgtattgagatcaacccctggctaagcaat
tacgatactccggaaaaccccgagtttattgtgattgaccttgacccgcacgatgtacct
tttaccgaggcggtagaggcggcgttaaaggtaaaggagatattcgaccggatggagacc
gatgtgttcatcaaaacatccggttcaaaagggctgcatatctattgctacgccggcggc
aagtacgattacgaccaggccaaaatgtttgccgaatacgtggcccacatggtcaaccac
gaattgccgaaaaccaccagcatagaacgcagtccggccaagcggccaaagcgcacttat
gtcgattttcttcaaaatcgtcgcgggcaaaccattgcctgcccatattctgtacgtcca
aagccgggggctacggtatcaaccccattgcactggcacgaggtgaatgataagctgaag
ctatccgattttacgatttataatgtgatggagcgggtccaaaaaaccaatgatccctgg
aaaggtttgcgggataaaaagttggatttgaaaaaggcgctggaggtattgaaggggatg
gaggggtaa

DBGET integrated database retrieval system