Mucilaginibacter mali: HQ865_21950
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Entry
HQ865_21950 CDS
T07211
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmab
Mucilaginibacter mali
Pathway
mmab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HQ865_21950 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmab03400
]
HQ865_21950 (ligD)
Enzymes [BR:
mmab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HQ865_21950 (ligD)
DNA repair and recombination proteins [BR:
mmab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HQ865_21950 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QKJ32308
UniProt:
A0A7D4PWC7
LinkDB
All DBs
Position
complement(5188442..5190970)
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AA seq
842 aa
AA seq
DB search
MGLAEYVKKRDFKKTSEPKSGKSSNKTLSFVVQRHHASHLHYDFRLELDGVLKSWAVPKG
PSLNPNDKRLAMMVEDHPYDYKNFEGIIPNGNYGAGVVMIWDEGTYESLAEDRADDVKTL
RAGLESGNLKFRLKGNVLHGEFALVKLHSAEDNSWLLIKHKDQYALHEFNSEDLVPSNIK
IMRNNKDGKAKAIPKHKTLENVKDIKEEPADEVEETNAADQPKASGRHFQPMMAKLEAKV
FDHEDWIYERKLDGYRAIGYTGKKARLISRNGIDFTHQYQKVTDVLKAIKKDAVLDGELV
IEDSKGKSLFQEIQNYTGDKKGLTLKYYVFDLLSLEGHDLRDMELIKRKELLKSLSAAFP
KDGAIIYHPHIKEKGSALMKEAAKEGWEGIIGKDANSYYNSGKRSDRWLKFKITQSQETL
ICGYTAPTGSRKHFGALILGMHKGDHMVYIGNCGTGFNEDSLKELFAEMEPLKTDKKPFE
EKQHNRTKVTWLKPKLVCEVYYSEWTNDGHLRHPVFKGLRADKNADKVTMETPEKQLADE
ELITIGKKKLKLTHLNKVFWPDEGITKGELLHYYRDMAKYIVPYIKDKPMSMRRQPNGIG
DEGFFQKDTDASKLPDWIKTHKVYSESNDKNINYIIGTDEASLLYMVNLGCIEINPWLSN
YDTPENPEFIVIDLDPHDVPFTEAVEAALKVKEIFDRMETDVFIKTSGSKGLHIYCYAGG
KYDYDQAKMFAEYVAHMVNHELPKTTSIERSPAKRPKRTYVDFLQNRRGQTIACPYSVRP
KPGATVSTPLHWHEVNDKLKLSDFTIYNVMERVQKTNDPWKGLRDKKLDLKKALEVLKGM
EG
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgggactggcggagtacgtaaaaaagcgtgattttaaaaaaaccagcgaaccgaagagc
gggaaaagcagcaataaaacactatcgtttgtggtgcagcgccaccatgcatcgcacctg
cattacgattttcggctggagctggatggcgtactgaaaagctgggcagtgcctaaaggc
ccttcattaaatcctaacgataagcgactggccatgatggtggaagatcatccttatgac
tataaaaacttcgagggtattatcccaaacggtaactacggtgcaggcgtggtgatgata
tgggacgagggcacgtacgaatcgctggcggaagatagggccgacgatgtgaaaaccctg
cgcgccgggttagaatcgggcaacctgaaattcaggctgaaaggaaacgtgctgcacggt
gagttcgcgttggtgaaactgcacagtgccgaggataactcctggctgctcatcaaacat
aaagaccagtacgcccttcatgaatttaacagcgaggacctggtgcccagcaatatcaag
atcatgcgcaataataaggatggcaaggcgaaagccatccccaaacataaaacgctggag
aatgtaaaggatattaaagaagagccagccgatgaggtagaagaaacgaatgcagcagac
caaccaaaagcatccggccggcattttcaacccatgatggccaagctggaagctaaagtt
ttcgaccatgaggactggatctacgagcgtaagctggacggttatcgtgccattggttat
acgggcaaaaaggcccggctgatatcgcgtaacggtattgattttacccatcaataccaa
aaggtaaccgatgtgttgaaagcgataaaaaaggacgccgttttagatggcgaactggtg
attgaggatagcaagggcaaaagtcttttccaggagatccaaaattatactggcgataaa
aaaggacttacgctgaagtattacgtgttcgacttgctgagtttagaggggcatgacctg
cgagatatggaactaattaagcgtaaggaactactgaaatcgctatcggccgccttcccc
aaagacggggctattatttatcatccgcacattaaggagaagggttcggcactgatgaag
gaagccgccaaggaaggctgggagggcatcatcggcaaggatgccaatagctattataac
agcggtaagcgcagcgataggtggctgaaatttaagatcacacaatcgcaggaaacgttg
atatgcggatataccgcgccgacaggttcgcgtaagcattttggcgcgttgatattgggg
atgcacaaaggcgatcatatggtgtacatcggcaattgcggcacgggctttaacgaggat
agtttaaaagaactttttgccgagatggagcccttgaaaaccgataagaagccgtttgaa
gaaaagcagcataaccgcacaaaggttacctggttaaaacctaagctggtttgcgaagta
tactattctgaatggaccaacgacgggcacctgcgccaccctgtatttaaaggcttgcgt
gccgataagaacgctgataaagtaactatggaaacgcctgaaaaacaactggccgatgag
gaactgatcaccatcggcaagaagaaattgaagcttacccaccttaacaaagtgttctgg
cctgatgaagggattaccaagggtgaattgctgcactattaccgagatatggctaaatat
attgtaccctatattaaggataaacccatgtccatgcgtcggcaacccaatggtattggc
gatgaagggttttttcagaaagataccgatgccagcaagctgcccgactggataaaaacg
cacaaggtgtattcggaaagtaatgataaaaatatcaactacattattggtaccgacgaa
gcaagtttactgtatatggttaatttgggttgtattgagatcaacccctggctaagcaat
tacgatactccggaaaaccccgagtttattgtgattgaccttgacccgcacgatgtacct
tttaccgaggcggtagaggcggcgttaaaggtaaaggagatattcgaccggatggagacc
gatgtgttcatcaaaacatccggttcaaaagggctgcatatctattgctacgccggcggc
aagtacgattacgaccaggccaaaatgtttgccgaatacgtggcccacatggtcaaccac
gaattgccgaaaaccaccagcatagaacgcagtccggccaagcggccaaagcgcacttat
gtcgattttcttcaaaatcgtcgcgggcaaaccattgcctgcccatattctgtacgtcca
aagccgggggctacggtatcaaccccattgcactggcacgaggtgaatgataagctgaag
ctatccgattttacgatttataatgtgatggagcgggtccaaaaaaccaatgatccctgg
aaaggtttgcgggataaaaagttggatttgaaaaaggcgctggaggtattgaaggggatg
gaggggtaa
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