Mycobacterium marinum E11: MMARE11_43850
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Entry
MMARE11_43850 CDS
T04774
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmae
Mycobacterium marinum E11
Pathway
mmae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMARE11_43850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmae03400
]
MMARE11_43850
Enzymes [BR:
mmae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMARE11_43850
DNA repair and recombination proteins [BR:
mmae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMARE11_43850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
CDM78522
LinkDB
All DBs
Position
complement(5312865..5315177)
Genome browser
AA seq
770 aa
AA seq
DB search
MGSAQAWPPGQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRK
RWPNGVDQASFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSPTGLAWIAQQAALEVHV
PQWRFVAEWTSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPL
TSGSKGLHLYTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQ
NSGSKTTIAPYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDAD
LPGDDRLLKYRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHYDFRLERDGVLVS
WAVPKNLPETTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYDTEKFRDD
SRNGSEKGEVIVNLHGSRISGRYALIQTNGDQWLAHRMKDQTVFDFDTLAPMLTSHGSVA
GLESGQWAFEGKWDGYRLLVEADHGALRLRSRSGRDVTAEYPQLRSLAADLADHHVVLDG
ELVALDSSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGN
LIVPELLPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGW
RVGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAAL
PAREAKGVTFVAPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggcgcaggcctggcctcctggacaggcgaatggtccgcaggtgacgctgacc
aacgcggacaaggtgctgtacccggctaccggaaccaccaagtctgacgtcttcggttac
tacaccggcatcgccgaggtgatgatcccgcatatcgccgggcgcccggcgactcgcaag
cgctggcccaacggcgtcgatcaggcgtcctttttcgaaaagcagctggcgtcgtcggcg
ccggactggctgccgcgtgccagcgtggtgcaccggtcgggaacgacgacctatccgatc
atcgacagccccaccggcctggcctggatcgcacaacaggccgccctcgaggtgcacgtc
ccgcagtggcggttcgttgccgagtggacgtcgaaaggcgaaatcctcacgcccgggccg
gccacccgattggtgttcgacctggacccgggcgagggcgtgacgatggcccaactcgcg
caggtggcgcgggcggtgcgcgatctgctcgccgacatcggcctgagtaccctcccgctc
accagcggtagcaagggcctgcacctctacaccccgctcgacgagccggtgagcagcaag
ggcgccacggtgttggccaaacgggtcgcgcagcaactggaaacggtgatgccggcgttg
gtcaccgcgaccatgaccaagagtctgcgggccgggaaagtgttcctggactggagccaa
aacagcggttcgaagaccaccatcgcgccgtattcgctgcgtgggcgcgaacaaccgacc
gtcgccgcaccacgcagctgggaggagctcgacgacccggggctgcgccagctgacctac
gacgaggtgcttgcccgcctcacccgcgatggcgatctgattgcggcgctggacgcggac
ctccccggcgacgaccggctgctcaaatatcgcagcatgcgcaacgcgtcgaaaacgccg
gagcccgtgccccgagccagacccgttgtcgggcagggtaataccttcgtgatccaagag
catcacgcgcgccgtctgcattacgacttcaggctggagcgtgatggggtactggtgtca
tgggcggtgccgaaaaacctgccggaaaccacgtcggtgaaccacctggccgtgcacacc
gaagatcatccgctggaatacgcgacgttcgagggcaacatcccgaaaggggagtacggc
gccggcaaggtgatcatctgggattccggcacctatgacaccgagaagttccgcgacgac
tcgagaaacggttcggaaaagggggaggtgattgtcaacctgcacggcagtcgaatctcg
gggcggtacgcgctgattcagaccaacggggaccaatggctggcgcatcgcatgaaggac
cagacggtcttcgatttcgacaccctcgcgcccatgctcacctcccacggttcggtggca
ggtctcgagtcgggtcagtgggcgttcgaaggcaagtgggacggctaccggctgctggtc
gaagccgaccatggcgcgctgcgactgcgctcccgcagcggacgtgacgtcaccgcggaa
tacccccaattacgttcattggccgccgatctcgctgatcaccacgtggtgctcgacggt
gaattggtggccctcgactcctccggagtgcccagcttcaacgagatgcagaaccgggtg
cgcgccacccgcatcgagttctgggcgttcgacttgctctttctggacggtcgctcgcta
ctgcgggccagataccgcgaccggcgcaagctactggaaaccctgggcagtgcgggcaat
ctgatcgttccggagttgttgcccggtgacggcgccgaggcgctggcctattcgcacaag
cgcggttgggagggagtcattgccaagcgccgcgactccggctatcaacccgggcggcgc
tcgtcggcgtggatcaaggacaaacactggaacacccaggaagtcgtcatcggcggttgg
cgagttggggagggtgggcgcagcagcgggattggatcgttgctcatgggcattcccggc
ccgagcggtttgcacttcgccggccgtgttggaaccggcttcaccgaacgtgacctggct
aacctcaagaagacgctggcgccgctgcataccgacgaatccccattcgacgctgcgctt
ccggcgcgcgaggccaagggtgttacgttcgtcgcgccgacgctggtcggggaggtgcgc
tatagcgagtggacccccgatgaccgattgcggcaatccagctggcgtgggttgcgcccg
gacaaaaacccgagtgaggtggtgcgcgaatga
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