Methylocaldum marinum: sS8_3882
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Entry
sS8_3882 CDS
T05638
Name
(GenBank) RNA polymerase
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmai
Methylocaldum marinum
Pathway
mmai02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
sS8_3882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmai03021
]
sS8_3882
Transcription machinery [BR:
mmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
sS8_3882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
LacI
Sigma70_ECF
HTH_24
TnsD
GerE
DUF3853
HTH_7
Motif
Other DBs
NCBI-ProteinID:
BBA35814
UniProt:
A0A250KWD4
LinkDB
All DBs
Position
complement(4206481..4206987)
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AA seq
168 aa
AA seq
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MSASEFSRTDFLNLMYVSHHGWLVGWLRNKLGCPDFAADLAQDTFLRVMLAREYENIREP
RAYLTTIAHGLVVNHWRRLDIERAYLEALACQPEPLVPSPEQRALILETLYEIDALLGAL
SPQVKSAFLLSQIEGLKYEDIARLIGVSLITVKRYMKQAFLHCLASMD
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaagcgaattttccagaaccgatttcctgaacctgatgtacgtgagccaccac
gggtggttggtgggctggctccggaacaagctcggctgccccgatttcgccgccgatctg
gcacaggacaccttcctgcgggtcatgctggcgcgcgagtacgaaaacatccgcgaaccc
cgcgcctacctgaccaccatcgcccacgggctggtggtcaaccattggcggcggctggac
atcgagcgggcctacctggaggcactcgcctgtcagccggaaccgctggtcccttcgccc
gagcagcgcgccctgatcctggaaacgctgtacgaaatcgacgccctcctcggtgccctg
tccccgcaagtcaagagcgccttcctgctgtcgcagatcgagggtctgaagtacgaagac
attgcccgactgatcggcgtttccctcatcaccgtcaagcggtacatgaaacaggcattc
ctgcattgcctggcatccatggattga
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