KEGG   Methylocaldum marinum: sS8_3882
Entry
sS8_3882          CDS       T05638                                 
Name
(GenBank) RNA polymerase
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmai  Methylocaldum marinum
Pathway
mmai02020  Two-component system
Brite
KEGG Orthology (KO) [BR:mmai00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    sS8_3882
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmai03021]
    sS8_3882
Transcription machinery [BR:mmai03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     sS8_3882
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 HTH_23 LacI Sigma70_ECF HTH_24 TnsD GerE DUF3853 HTH_7
Other DBs
NCBI-ProteinID: BBA35814
UniProt: A0A250KWD4
LinkDB
Position
complement(4206481..4206987)
AA seq 168 aa
MSASEFSRTDFLNLMYVSHHGWLVGWLRNKLGCPDFAADLAQDTFLRVMLAREYENIREP
RAYLTTIAHGLVVNHWRRLDIERAYLEALACQPEPLVPSPEQRALILETLYEIDALLGAL
SPQVKSAFLLSQIEGLKYEDIARLIGVSLITVKRYMKQAFLHCLASMD
NT seq 507 nt   +upstreamnt  +downstreamnt
atgtccgcaagcgaattttccagaaccgatttcctgaacctgatgtacgtgagccaccac
gggtggttggtgggctggctccggaacaagctcggctgccccgatttcgccgccgatctg
gcacaggacaccttcctgcgggtcatgctggcgcgcgagtacgaaaacatccgcgaaccc
cgcgcctacctgaccaccatcgcccacgggctggtggtcaaccattggcggcggctggac
atcgagcgggcctacctggaggcactcgcctgtcagccggaaccgctggtcccttcgccc
gagcagcgcgccctgatcctggaaacgctgtacgaaatcgacgccctcctcggtgccctg
tccccgcaagtcaagagcgccttcctgctgtcgcagatcgagggtctgaagtacgaagac
attgcccgactgatcggcgtttccctcatcaccgtcaagcggtacatgaaacaggcattc
ctgcattgcctggcatccatggattga

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