Methylocaldum marinum: sS8_5379
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Entry
sS8_5379 CDS
T05638
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
sS8_5379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmai03400
]
sS8_5379
Enzymes [BR:
mmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
sS8_5379
DNA repair and recombination proteins [BR:
mmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
sS8_5379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBA37298
UniProt:
A0A250L053
LinkDB
All DBs
Position
complement(5784571..5787978)
Genome browser
AA seq
1135 aa
AA seq
DB search
MIWQNLNGCGDSLALAQAAKQDKRLYLIVTEDTHSALRLEHEIEFFLDGSTSVLHFPDWE
TLPYDVFSPLPEIVSERLKTFAQLARIEHGILITPVATLMQRLAPRSHILANTFALKVGS
RLNLEETRQRLESVGYECVSQVLQHGEFAVRGSIIDLFPMGSTVPFRIELFDDEVESIRT
FDTETQRSLEKVGEISLFPAREFPFDEEAIKRFRRAFRTHFPDTSINNPLFQDVSKSIAP
GGIEYYLPLFVDETETLFDYLPKKTTIVLHHATDAAAEAFFQEAAKRHAHRSGHIDRPPL
SPELLYLTPGDLSERLSAHPRIYVTSSSARAAEKFESIDFGCRPLPGLAIDPKLKQPAAV
LASFLAENEGKVLFVAETAGHREALLDTLAKHSIRPQVVESWQGFLAAENSPCLVVAPMD
HGLWLADPPLAIITETQLSGEKVQQRRRRRSGTERNLEQIFRNLEELDVGSPVVHQDHGV
GRYLGLAKLTVGGIETEFLALEYANNDKLYVPVSSLHLISRYSGAGPETAPLHKLGGEQW
HKARRKALERVRDIAAELLNIYAKRAARQGHSYKTVSEEYGAFAAGFPFEETPDQETAIV
DVIKDMASTRPMDRVICGDVGFGKTEVAMRAAFIAAQNGKQVAVLVPTTLLAQQHFQNFR
DRFADWPIRIEVVSRFVSKKQQEQLLEDLSKGAVDVLIGTHKILQKDVRFKNLGLVIVDE
EHRFGVAQKEHFKKLRSELDFLTLTATPIPRTLNMAMSGLRDISIIATPPPNRHAIKTFV
SEWDDALIQEAILREIKRGGQVYFLHNKIETMEKTARDLEKLVPAARIRIAHGQMAEREL
ERIMLDFYHQRFNVLLCTTIIESGIDVPTANTIIIHRADLLGLAQLHQIRGRVGRSHHRA
YAYLVVPPKSVMTADAVKRLEAIEATGELGAGFMLSSHDLEIRGAGELLGGEQSGQIQEI
GLSLYTELLERAVAALKSGKSLSLDILPHEAGPEIDLQCPALIPDTYLPDVHTRLVLYKR
IANAKSEEDLRKLQVEMIDRFGLLPPPTKNLFAITELKLKAEALGVHKIEAGSGGGRLIF
NANPAIDPAKVIRLIQAQPQTYKLDGPDKLKFFARFDTPESKVAFIDSLLQQLAA
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgatctggcaaaaccttaacggctgtggtgattctctggctttggcccaagccgcaaag
caggacaagcggctctatctgatcgtaaccgaagatacgcatagcgcacttaggctcgaa
catgaaatcgagttttttctcgacggaagcacatcggtacttcactttcccgattgggaa
accctgccctacgatgttttctcccctcttccggaaatcgtctcggagcggctgaaaaca
ttcgctcaattggcacgcatcgaacacgggattctgatcacgccggtcgccaccctgatg
caacgactggccccgcgctcccatatattggcgaatacctttgcgctaaaggtaggcagc
cggctcaatctcgaagaaacccggcaaagactggaaagcgtcggatatgagtgcgtttcg
caagtactgcaacacggcgagtttgcagtgcggggttcgattatcgatcttttcccgatg
ggcagtaccgttccctttcgaatcgaacttttcgacgacgaggtggaatcgattcggact
ttcgatacggaaactcagcggtcgctggagaaggtcggggaaatcagcctattcccggct
cgcgagtttcctttcgacgaagaagcgataaagagatttagacgtgcttttcgaacacat
tttcccgacacgtccatcaacaatccgttatttcaagacgtcagcaaaagcatagcaccg
ggaggcatcgagtactatctgccgctgttcgtggacgaaaccgaaaccctattcgactat
ctgccgaagaaaaccactatcgttctgcaccatgccacggacgccgcggccgaagcgttt
tttcaggaagccgcaaaacgccacgctcaccggtccggccacattgaccgccccccactc
tcaccggaattgctgtatctcacgcccggagacctgtccgaacggctttccgctcacccc
agaatctatgtcacctcgtcttccgcacgcgccgccgaaaaattcgaatcgatcgatttc
ggctgccggccgcttcccggcctggcgatagatcctaagctgaaacagccggctgccgtt
ctggcctcttttctcgccgagaacgaaggcaaggtcttgtttgtcgccgaaaccgcggga
catcgggaagcgctactggatacgcttgcaaagcactcgataaggccgcaggtcgtcgaa
agctggcaaggattccttgccgcggagaacagcccttgtctggtcgtggcgccgatggat
catggtctatggctggccgatcctccgctggccatcattaccgaaacccagctttccgga
gaaaaggttcaacagagaaggcgccgccgatccggaaccgaacgcaatctggagcagatt
ttccgcaatctggaagaattggatgtcggctcgccggtcgtgcatcaggaccacggcgtc
ggacgctatctcggccttgccaaactaacggtaggcggaatcgaaacagagtttctcgcg
ctcgagtatgccaataacgacaagctctacgtcccggtttcctcgctgcacctgatcagc
cgctatagcggcgccggcccggaaaccgcccctctgcacaaactgggcggagagcagtgg
cacaaggccaggcgcaaggcgctggagcgggtacgcgatattgcggcggaattgctgaat
atttatgcgaagcgagccgccaggcaaggacattcctataaaacggtaagcgaggaatac
ggcgctttcgcggcaggttttccgttcgaggaaacgcccgatcaggaaaccgccatcgtg
gacgtcataaaagacatggcctcgacccgccccatggatagggtaatctgcggcgacgtc
ggcttcggcaagaccgaagtggccatgcgcgcggcttttatcgcggcacagaacggcaaa
caagtggcggttctggtgcccactaccctgctggcacaacagcattttcagaacttccgg
gaccggttcgccgactggccgattcggatcgaggtggtttcgcgcttcgtctccaagaaa
cagcaggagcaacttctcgaagatctgtccaagggggcggtcgacgttctcatcggcacc
cacaagattttgcaaaaggatgtccgcttcaagaatctgggactggtgatcgtcgacgag
gagcaccggttcggcgtcgcccaaaaagaacatttcaagaaactgcgcagcgaactggac
ttcctgactctgacggcaacgccgattccgcgcacgctcaacatggcgatgtcggggctc
cgggacatttccatcattgccaccccgccgcccaaccgtcacgccatcaagactttcgtc
agcgaatgggacgatgcactgattcaggaagcgattctccgcgaaatcaaacgcggtgga
caggtctatttcctgcacaacaagatcgaaaccatggagaaaacggcacgagacctggaa
aagctggtgcccgccgcccgtatccgcatcgcccacggacaaatggcggaacgggaactg
gagcggatcatgctggatttctatcatcagcgtttcaatgtgctgctttgcaccaccatc
atcgaaagcggaatcgacgttcccacggcaaacaccattatcatccaccgcgccgatttg
ctgggactcgctcagctgcaccagatccgaggccgggtcggccgctcgcaccatcgtgct
tacgcttacctggtggtaccgccgaaatccgtgatgaccgccgatgcggtcaaacggctc
gaggccattgaagccacgggcgaactcggagccgggttcatgctgtcttcccacgacctg
gaaatccgcggggccggcgaattgttgggcggcgaacaaagcggtcagatccaggaaatc
ggcctcagcctgtacacggaattgctggaacgggcggtggcggccctcaaatccggcaaa
tcgctgagtctcgacatacttccccacgaggccggtcccgaaatcgacctgcagtgccct
gctctcattcccgacacttatttaccggatgtccatacccgcctcgtactttacaagcgg
atcgccaatgccaagagcgaagaggatttgcgcaagctgcaagtggaaatgatcgaccgg
ttcggccttttaccgccgcccaccaagaacttgtttgcaataaccgaactcaaactgaaa
gcggaagccctgggcgtacacaagatcgaagcgggctccggcggcggtcgcctgatattc
aacgcgaatcctgccatcgatccggcgaaggtcatccggctgatccaggcccaaccgcaa
acctacaaactggatggcccggataaacttaaatttttcgctcgcttcgatacccccgag
agtaaagtcgctttcatcgacagcttgctgcaacagctcgcagcttag
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