Mycobacterium marseillense: CKJ54_04600
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Entry
CKJ54_04600 CDS
T05049
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmal
Mycobacterium marseillense
Pathway
mmal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CKJ54_04600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmal03400
]
CKJ54_04600
Enzymes [BR:
mmal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CKJ54_04600
DNA repair and recombination proteins [BR:
mmal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CKJ54_04600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Met_10
Motif
Other DBs
NCBI-ProteinID:
ASW89260
LinkDB
All DBs
Position
900439..902715
Genome browser
AA seq
758 aa
AA seq
DB search
MSSTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTQIAEVMIPHVAGRPATRKRWPNGVEQ
ESFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDDPAGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGAATRLVFDLDPGERVTMAQMANVARAVRDLMAGIGLTTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLARVARDGDLLAELDASDKQAPVP
DRLTKYRSMRDASKTPEPVPVTKPAVGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVP
KNLPETPSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIV
NLHGAKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGK
WDGYRLLIEIDHGSFRVRSRRGREVTQEYRELRWLADGLAEHHVVLDGEAVVLDSSGVPN
FHEMQNRGKGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSNLIVPDLLPGDGK
EALEHSGERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEIVIGGWKAGEGGRSSGIG
SLLMGIPSAGGLRFAGRVGTGFTERDLAKLKKTLAPLHTDESPFDPPLPRSEARGVTYVR
PVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgacggcggggccgcgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcagatcgccgaggtgatg
atcccccacgtcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgaaaagcaactggcctcgtcggcccctgactggctgccacgcgccagc
gtgacccaccgatccggaacgacgacctatccgatcatcgacgaccccgccggcctggcc
tggatcgcccaacaggcggcgctggaagtccacgtgccgcagtggcgattcgtcgccgag
tggacccgcagccgggccgaagaactcaaaccgggcgcggcgacgcgattggtgttcgac
ctcgaccccggtgaacgcgtgacgatggcacagatggccaacgtggcgcgcgccgtccgc
gacctgatggccgggatcggactgaccaccttcccgctcaccagcggcagcaagggcctg
cacctgtacgcgccgctcgacgagccggtgagcagcaaaggcgccacggtactggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagctggtcacctcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacg
atcgcgccgtactcgctgcgcggacgcgaacatccgaccgtcgcggctccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagttgcggtacgacgaagtcctggcccgggtc
gcgcgcgacggcgatctgcttgcggagctggacgcctcggataagcaagccccggtgccc
gatcggctgaccaagtaccgcagcatgcgcgacgcgtccaagaccccggagccggtcccg
gtgacaaaacccgctgtcgggcaagggaattcctttgtcattcaagagcaccatgcgcgg
cggctgcactacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgccc
aagaacctgcccgaaacgccgtcggtgaaccacctggcggtccacaccgaggatcatccg
ctcgaatacggcgggttcgagggcgtcatccccaagggcgaatacggtgcgggcaaggtg
atcatctgggactccggaacctacgacgccgaaaagttcctcgacgatgaggtcatcgtc
aacctgcacggcgccaagatctccggccgctacgcgctgattcaaaccaacggcgaccag
tggctggcgcaccggatgaaggaccagaaggtcttcgagttcgacacgatcgcccccatg
ctcgccacccacggctcggtgacggcactgaaggcaggccagtgggcgttcgagggcaag
tgggacggttaccggctcctgatcgaaatcgaccacggctcctttcgggtacggtcgcgg
cgcggccgcgaagtcacccaggagtaccgtgaactccgttggctggcagacggtctcgcc
gaacatcatgtggtgctcgacggcgaggccgtcgtgctggactcctccggggtgcccaac
ttccacgagatgcaaaaccgcggcaagggctcacgggtcgaattctgggcgttcgacctg
ctctacctcgacggccgttcgttgctgcgggcccgctaccgcgatcggcgaaagctgctg
gaaatgctggccgccggcagcaacctcatcgtccccgacctgctgccgggtgacggcaaa
gaggcgctggagcactccggggagcgcggctgggagggagtgatcgccaagaagcgcgac
tccacttatcagccgggccgccgttcgtcgtcgtggatcaaggacaagcactggaacact
caggagatcgtcatcggcggttggaaagccggcgaaggcggacgcagcagcggcatcggc
tcactgctgatgggtatccccagcgcgggcgggctgcgtttcgccgggcgcgtcggcacc
gggttcaccgaacgcgacctggccaagttgaagaagacgctggcgccgctgcacaccgac
gaatcccccttcgacccaccgcttccccgaagcgaagctcgcggcgtgacgtatgtgcgg
ccggtgctggtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaa
tcgagttggcgcgggctgcgaccggacaaggaggcaagtgaggtggtgcgcgagtga
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