Mycobacterium malmoense: K3U93_19955
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Entry
K3U93_19955 CDS
T07571
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmam
Mycobacterium malmoense
Pathway
mmam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K3U93_19955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmam03400
]
K3U93_19955
Enzymes [BR:
mmam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K3U93_19955
DNA repair and recombination proteins [BR:
mmam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K3U93_19955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZA16878
LinkDB
All DBs
Position
complement(4357837..4360161)
Genome browser
AA seq
774 aa
AA seq
DB search
MGSTAKARVRLTNADKVLYPATGTTKQDVFDYYAGIAEVMLPHIAGRPATRKRWPNGVDR
ESFFEKQLASSAPDWLPRGSVTHRSGTTTYPIIDSPAGLAWIAQQAALEVHVPQWRFVAE
WTRSSAEVLKPGPATRLVFDLDPGAGVTMAQLAEVAHAVRDLIADIGLTTFAVTSGSKGL
HLYTPLTEPVSSKGATTLAKHVALQLEKTMPKLVTSTMTRSVRAGKVFVDWSQNNGSKTT
IAPYSLRGREHPTVAAPRSWDEIDGPALRQLRYDEVLARVARDGDLLAPLDADAPIRDRL
TKYRSMRDASKTPEPVPTAKPATGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETPSVNHLAVRTEDHPLEYATFEGVIPKGEYGAGKVIIWDSGTYDAEKFRGDEVIVNLH
GSRISGRYVLIHTNGDQWLAHRMKDQKAFDFDALDPMLATQGSVAACTASQWAFEGKWDG
YRLLVEVDHGALRVRSRRGREVTTEYPELRAVADDLADHHAVLDGEAVVLNESGVPSFHE
MQNRGRGSRVEYWAFDLLYLDGRSLLRAKYRDRRKLLETLASGTNLIVPELLPGDGAQAL
EHSRKHGWEGVIAKRRDSTYQPGRRAASWIKDKHWNTQEVVIGGWKAGEGGRTSGIGSLL
MGIPGEGGLHFAGRVGTGFTERDLANLKKTLAPLHTKRSPFDAPLSTLDAKGVTFVEPVL
VGEVRYSEWTPDDRLRQTSWRGLRPDKKPSEVVRESVTGDAFPEKRRRQSHSRG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgacggcgaaggcgcgggtgaggctgaccaacgccgacaaggtgctgtatccc
gcgaccggaaccaccaagcaggacgtcttcgactactacgcggggattgccgaggtgatg
ctgccgcacatcgccgggcgtccggcgacccgcaagcgctggcccaacggtgtcgaccgc
gagtcgttcttcgaaaagcagctggcctcgtcggcgcccgactggctgccgcgcggcagc
gtcacccaccggtcggggacgacgacctatccgatcatcgacagccccgccgggctggcg
tggatcgcacagcaggcggcgctggaggtgcacgtgccgcagtggcggttcgtcgccgag
tggacgcgaagcagtgctgaagtgctcaagccgggcccggcgacgcggttggtgttcgac
ctggaccccggtgcaggcgtgacgatggctcagctggctgaggtggcgcatgcggtccgt
gatctgatcgccgatatcgggctgaccacctttgcggtgaccagtggtagcaagggcttg
catctctacacgccgctgaccgagccggtaagcagcaagggtgccacgacgttagccaaa
catgttgcgctgcaactggaaaagacgatgcccaagctggttacatcgaccatgaccagg
agcgtgcgggcgggaaaggtgttcgtggactggagccagaacaacggctccaagacgacc
atcgcgccgtattcgttgcgcggacgcgaacatccgacggtcgcggcgccacgcagctgg
gacgaaatcgacggccctgcgctgcgccagttgcgttacgacgaggtgcttgcccgggtc
gcgcgcgacggcgacctgctggcaccgctggacgctgacgcgccgatccgcgatcggctg
accaaataccgcagcatgcgcgacgcgtcgaaaacgcccgagccggttcccacagcgaaa
cctgctaccgggcagggcaatacgttcgtcatacaggagcaccacgcccgccggctgcac
tacgacttccggctggaacgagacggcgtgctggtgtcctgggccgtgccgaagaacctg
cccgaaaccccatcggtgaaccatttggcggtccgcaccgaggaccatccgctggaatac
gccaccttcgagggcgtgatccccaagggcgaatacggcgccggcaaggtgatcatctgg
gactcgggaacctacgacgccgagaaattccgtggtgacgaggtcatcgtcaatctgcac
gggagccggatctctgggcgctacgtgctgattcacaccaatggcgaccagtggctggcg
caccggatgaaggatcaaaaggccttcgacttcgacgcgctcgaccctatgctcgccacg
cagggttcggtcgcggcgtgcacggcgagccagtgggccttcgagggtaagtgggacggc
taccgcctgctggtcgaggtcgatcacggcgccttgcgggtacggtcccggcgcggccgc
gaagtcaccaccgaataccccgaattacgggcggtagcagacgatctggcggaccatcac
gcggtgctcgacggcgaggccgtcgttctgaacgagtccggcgtgcccagcttccacgag
atgcagaaccggggccggggcagccgcgtcgagtactgggcattcgatctgctctacctg
gacggccgctcgctgctgcgcgcgaagtaccgggatcggcgaaagctgctggaaaccctg
gccagcggcaccaacctcatcgttcccgagctgctgcccggcgacggcgcccaggcgctg
gagcattcccgcaagcacggctgggagggcgtgatcgccaagcggcgcgactccacctat
cagccgggccgacgcgcggcctcctggatcaaggacaagcactggaacacccaggaagtc
gtgatcggcggctggaaagccggagagggcggccggacgagcggcatcggctcgctgctg
atgggcatccccggtgaaggcgggctgcatttcgccggacgggttggtaccggcttcacc
gaacgcgacctcgcgaacctgaagaagacgctggcgccgttgcacaccaaacggtctccc
ttcgacgcgccgctttcgacactcgacgccaagggcgtgacgttcgtcgagccggttctg
gtgggcgaggtgcgctacagcgaatggaccccggatgaccgcctgcgccaaacgagttgg
cgcgggctgcggccggacaagaagccaagcgaggtggtgcgcgaaagtgtaactggcgac
gcgtttccggagaagcggcgtcggcagtcgcactctcgcggctag
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