Mycobacterium mantenii: MMAN_52640
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Entry
MMAN_52640 CDS
T07431
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mman
Mycobacterium mantenii
Pathway
mman03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMAN_52640 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mman03400
]
MMAN_52640 (ligD)
Enzymes [BR:
mman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMAN_52640 (ligD)
DNA repair and recombination proteins [BR:
mman03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMAN_52640 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBY41130
LinkDB
All DBs
Position
5616882..5619125
Genome browser
AA seq
747 aa
AA seq
DB search
MKLTNADKVLYPATGTTKRDIFDYYTRIAEVMVPHIARRPATRKRWPNGVEESSFFEKQL
ASSAPDWLPRASVSHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFVVEWTRSNAEE
LKPGPATRLVFDLDPGEGVTMAQLAEVARAVRELITEIGLTTYPLTSGSKGLHLYTPLQE
PVSSKGATVLAKRVAQQLEETMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTTIAPYSLRG
REHPTVAAPRTWEELDDPSLRQLRYDEVLDRVARDGDLLAPLDQDAPVPDRLTKYRSMRD
ASKTPEPVPPSKPVVGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETTSVNH
LAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYEAEKFHDDEVIVNLHGSKVSGRY
ALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDGYRLLVEMD
HGVLRVRSRRGREVTNEYPQLQSLADDLADHHVVLDGEAVVLGASGVPSFHAMQNRGRGS
RVEFWAFDVLYLDGRSLLRARYQDRRKLLETLASGSSLIVPELLPGDGKEALKHSGEHGW
EGVVAKKRDSTYQPGRRSASWIKDKHWNTQEVIIGGWKAGEGGRSSGIGSLLMGIPVDGG
LHFAGRVGTGFTDRDLASLKKTLAPLHTDESPFRPPLPRIEARGVTYVEPVLVGEVRYSE
WTPDDRLRQSSWRGLRPDKEPSEVVRE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctcaccaacgctgacaaggtgctctaccccgccaccgggaccacgaagcgggac
atcttcgactactacacccggatcgccgaggtgatggtcccgcacatcgcgcgacgcccg
gccacccgcaagcggtggcccaacggcgtcgaggagtcctcgttcttcgaaaagcagctg
gcttcctcggcccccgactggctgcctcgcgccagtgtctcccaccggtccgggaccacg
acctacccgatcatcgacagcgtcgacgggctggcctggatcgcgcaacaggctgcgctg
gaggtccacgtgccgcagtggcggttcgtcgtcgagtggacccggagcaatgccgaggaa
ctcaaacccggcccggcgacccgcctggtgttcgacctcgatcccggggaaggcgtgacc
atggcccagctggccgaggtagcccgcgccgtccgcgagctgatcaccgaaatcgggctg
accacatatccgctcaccagcggcagcaagggcctgcacctctacacgccgcttcaggaa
ccggtgagcagtaagggcgccacggtactggccaaacgtgttgcgcaacagctggaggag
acgatgcccaagctggtgacgtcgaccatgaccaagagcctgcgcgccggaaagatcttc
ctggactggagccagaacaacggctccaagaccaccatcgcgccctactcgctgcgcgga
cgcgaacaccccacggtcgcggcgccgcgcacctgggaggaactcgacgacccgtcgctg
cgccagctgcgttacgacgaagtgctggaccgggtcgcccgcgacggcgatctgctggca
ccgctcgaccaggatgcgccggtcccggaccgcctgaccaagtaccgcagcatgcgcgac
gcctcgaaaacccccgagccggtcccaccgtcgaaacccgttgtcggacaagggaacagc
ttcgtcatccaagagcaccacgcccgtcggctacactacgacttccggctggagcgagac
ggcgtgctggtgtcctgggcggtgccgaagaacctgcccgagaccacctcggtgaaccat
ttggcggtccacaccgaggatcatccgctggagtacggcgggttcgaaggcgtcatcccc
aagggcgagtacggcgcggggaaggtgatcatctgggactccggaacctatgaggccgag
aagttccatgacgacgaggtgatcgtcaatctgcacggcagcaaggtctcgggccgctat
gcgctgattcagaccaacggcgaccagtggctggcgcaccgaatgaaggatcaaaaggtc
ttcgagttcgacacgatcgcccccatgttggccacccacggttcggtgacggcgctcaag
gcgggtcagtgggcgttcgaaggcaaatgggatggctaccggctgttggtcgaaatggac
cacggcgtcctgcgggtgcggtcccgtcggggccgcgaggtcaccaacgaatatccgcaa
ttacagtcgctggcagacgatctcgccgaccaccatgtggtgctcgacggggaggccgtc
gttctgggcgcgtcgggcgtgccgagctttcacgcgatgcagaaccgtggccgcggcagc
cgcgtcgaattctgggcgttcgacgttttgtatctcgatggtcgctcgctgctgcgggcc
cgctatcaagaccggcgaaagttgttggaaacactggccagtggcagcagcctgattgtc
ccggagctgctgcccggggacggcaaagaggcattgaagcactccggtgagcacggctgg
gagggcgtggtcgccaagaagcgcgactccacctaccagcctggccgccgttcggcatcc
tggatcaaggacaagcactggaacacacaggaagtcatcatcggcggctggaaggcgggg
gagggtgggcgcagcagcggcatcggctcgctgctgatgggaataccggtcgacggcggc
ctgcacttcgccgggcgagtcggtaccggtttcaccgatcgtgacctggccagcctgaag
aagaccctggcaccgttgcacaccgacgaatcccctttccgcccaccgttacccaggatc
gaggcgcgcggcgtgacatacgtggagcccgtcctggtgggggaggtgcgctacagcgag
tggaccccggatgaccggctccgccaatcgagttggcgggggctgcggccggacaaggaa
ccgagtgaggtggtacgcgagtga
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integrated database retrieval system
