Modestobacter marinus: MODMU_2075
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Entry
MODMU_2075 CDS
T02167
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmar
Modestobacter marinus
Pathway
mmar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MODMU_2075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmar03400
]
MODMU_2075
Enzymes [BR:
mmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MODMU_2075
DNA repair and recombination proteins [BR:
mmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MODMU_2075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
CCH87510
UniProt:
I4EVU7
LinkDB
All DBs
Position
2029542..2031011
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AA seq
489 aa
AA seq
DB search
MAPPDPLATYRAKRDPARTAEPVPAADQPLPVGDDDTFVVQEHHTPRGRTGQRVHWDLRL
ERDGVLKSWAVPKGPPTEPGVNRLAVPTEDHPLEYASFAGTITAGEYGGGQVSIWDAGRY
ATEKWADDHVTVSFDGRRLSGRYVVFRLPDGTWNVRKLDADPVVDAPVAAGVPEDLTPML
AAIGELPRADDPRWGYEFKWDGVRALAHVRGGRVRLRARSGNDVTATYPELHRLPEVLSG
HDAVVDGEVVALDGRGRPDFGLLQGRMHRTGPEVARMAAAAPVTYLVFDLLALDGENLLG
LPYTERRERLDALGLASDRWVTTPWFRGNGEQVQAASLENGLEGVVAKRLDSVYRPGGRG
PDWRKVKNLRTQSVVVGGWRPGEGRRAGGIGSLLVGVHDDTGRLVFAGHVGTGFTARALA
DLAPLLTPRATPPFADALPREVTRDARWVEPLLVGEVRYGEWTREGRLRHPAWRGLRDDV
AAADVVVEP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcctcccgacccgctggccacctaccgggccaagcgcgacccggcgcgcaccgcc
gagcccgtcccggccgcggaccagccgctgccggtgggcgacgacgacaccttcgtcgtc
caggagcaccacacaccccgcggccgcaccgggcagcgggtgcactgggacctgcggctc
gagcgcgacggcgtgctgaagagctgggcggtgcccaagggcccgccgaccgagccgggg
gtgaaccggctcgccgtccccaccgaggaccacccgctggagtacgcctccttcgccggc
accatcaccgccggcgagtacggcggcggccaggtgagcatctgggacgccggccgctac
gcgacggagaagtgggccgacgaccacgtcaccgtgtccttcgacgggcggcggctgagc
ggccgctacgtggtgttccggctgcccgacggcacctggaacgtgcgcaagctcgacgcc
gacccggtggtcgacgcgccggtcgcggccggcgtgccggaggacctgaccccgatgctc
gccgccatcggcgagctgccccgggccgacgacccgcgctggggctacgagttcaagtgg
gacggcgtccgggcgctcgcgcacgtgcgcggcggacgggtgcggctgcgggcccgcagc
ggcaacgacgtcaccgccacctaccccgagctgcaccggctgcccgaggtgctgtccggg
cacgacgcggtggtcgacggcgaggtggtcgcgctggacggccgcggtcgcccggacttc
gggctgctgcagggccggatgcaccgcaccgggcccgaggtggccaggatggcggcggcc
gcaccggtcacctacctggtgttcgacctgctcgcactggacggcgagaacctgctcggg
ctgccgtacaccgagcggcgcgagcggctggacgcgctggggctggcctccgaccggtgg
gtcaccacgccgtggttccgcgggaacggggagcaggtccaggcggcgagcctggagaac
gggctggagggcgtcgtcgccaagcggctggactcggtctaccggcccggcggccggggc
ccggactggcggaaggtgaagaacctgcgcacccagtcggtggtcgtcggcggctggcgg
cccggcgagggccggcgggccggcgggatcggttcgctgctggtcggggtgcacgacgac
accgggcggctggtgttcgccggccacgtcggcaccggcttcacggccagggcgctcgcc
gacctcgcgccgctgctcaccccgcgggccaccccgccgttcgccgacgcgctgccccgc
gaggtcacccgtgacgcgcggtgggtcgagccgctgctggtcggcgaggtccggtacggg
gagtggacccgggagggccggctgcggcacccggcctggcgcggcctgcgcgacgacgtc
gcagccgccgacgtggtggtggagccgtga
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