Mycolicibacterium mageritense: MMAGJ_09520
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Entry
MMAGJ_09520 CDS
T07395
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmat
Mycolicibacterium mageritense
Pathway
mmat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMAGJ_09520 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmat03400
]
MMAGJ_09520 (ligD_1)
Enzymes [BR:
mmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMAGJ_09520 (ligD_1)
DNA repair and recombination proteins [BR:
mmat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMAGJ_09520 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBX31670
LinkDB
All DBs
Position
complement(971441..973702)
Genome browser
AA seq
753 aa
AA seq
DB search
MERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIADVMLPHIAGRPVTRKRWPNGVTEAS
FFEKQLASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIGQQAALEVHVPQWRFAGNDQ
GPATRIVFDLDPGEGVTMHQLCEVAQAVRELMGDIGLTTYPLTSGSKGLHLYVPLTEPVS
SHGASVLARRVAQQLEHAMPELVTATMTKSLRAGKVFLDWSQNSGSKTTIAPYSLRGREF
PTVAAPRTWDEIGDPDLRHLRFDEVLQRVSEDGDLLAGLDDDAPVADKLTTYRSMRDASK
TPEPVPKSVATTGDNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDTTSVNHLAV
HTEDHPLEYLDFHGTIPKGEYGAGDMVIWDTGTYEAEKFRVNDDPEATNGEVIFTLRGDR
IDGRYALIQTEGKNWLAHRMKDQKSPQPQDFAPMLATEGSVAKLKATQWAFEGKWDGYRL
IVDANRGRLQLRSRRGRDVTGEYPQLKALAADLADHHVVLDGEVVALDETGVPSFGEMQN
RARSTRVEFWAFDLLWLDGRSLLRAKYSDRRRLLEALAAGGGVIVPDLLPGNGGPAAMKH
AREKRFEGVIAKKRDSTYQPGRRSASWIKDKFWNTQEVVIGGWRQGEGGRSSGIGALMLG
VPGPGGLQFAGRVGTGFTEKELAKLKELLKPLHTDESPFDEPLPRLDARGVTFVRPELVG
EVRYSERTTDHRLRQPSWRGLRPDKTPDEVVWE
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctacgaacgggttcgcctgacgaatcccgacaaggtgctctatcccgccacc
ggcaccaccaaggcggaggtgttcgactactacctgagcattgccgacgtgatgctgccg
cacatcgccggccggcctgtgacccgcaaacgctggccgaacggtgtcaccgaagcgtcg
ttcttcgagaagcaactcgcgtcgtcggcgcccgactggctggcgcgcggcaccatcgtg
cacaagtccggaaccacgacctacccgatcatcgacacccgagagggcctggcctggatc
ggccagcaggccgcgctggaagtgcatgtgccgcaatggcgtttcgcgggcaacgatcag
ggaccggccacccgcatcgtgttcgatctcgatccaggcgagggcgtcacgatgcatcag
ctgtgcgaggtggcgcaagccgtgcgtgagctgatgggcgacatcggtttgacgacgtat
ccgctcaccagcggcagcaagggcctgcacctgtatgtgccgctcaccgaaccggtcagc
tcgcacggcgcctcggtgctggcccggcgcgtggcccagcagctcgaacatgccatgccc
gaactggtgacggcgaccatgaccaagagcctgcgcgcaggcaaggtgttcctcgactgg
agccagaacagcgggtccaagaccaccatcgcgccctactcgctgcgcggccgcgagttt
cccaccgttgccgcaccgcggacctgggacgagatcggcgaccccgacctgcgacacctg
cggttcgacgaagtgctgcaacgggtttccgaggacggcgacctgctggccgggctcgac
gacgatgcgcccgttgccgacaagctcacgacgtaccgcagcatgcgcgatgcgtcgaaa
acacccgaaccggttccgaaaagcgttgccacaacgggtgacaacgaccggttcgtgatc
caggaacatcacgcacgcaggctgcactacgacctgaggctcgaacgcgacggcgtgctg
gtgagctgggccgtaccgaagaacctgcccgacaccacctcggtaaatcaccttgcggtg
cacaccgaggatcatccgctcgaatacctggactttcacggcacgatcccgaaaggcgag
tacggcgcgggtgacatggtcatctgggacaccggaacgtacgaggctgagaagttccgg
gtcaatgacgatcccgaggccacgaacggtgaggtcatcttcacgctgcgcggtgaccgc
atcgacgggcgatacgcgctcatccagaccgagggcaagaactggcttgcgcatcggatg
aaggaccagaaatccccgcagccccaggacttcgcgcccatgctggccaccgaggggtca
gtcgccaaactcaaggccacgcaatgggccttcgagggcaagtgggacggctaccgcctg
atcgtcgacgccaaccgagggcgattgcagctgcgctcccgccgggggcgcgacgtcacc
ggtgaatatccacaactcaaggccctggccgccgacctcgccgaccatcatgtggtactc
gacggcgaggtcgtcgcgctcgacgagaccggggtaccgagcttcggcgagatgcagaac
cgggcccggtcgacccgggtcgagttctgggcgttcgacctcctgtggctcgacggccga
tcattgttgcgcgccaagtactctgaccgccgccggctcctggaggcgttggccgccggg
ggcggcgtgatcgttcccgacctgctgcccggcaacggcgggcccgcagcgatgaagcac
gcacgggagaagcggttcgaaggggtcatcgccaagaagcgcgactccacctaccagccg
ggccgccgctcggcctcgtggatcaaggacaagttctggaacacccaggaagtggtgatc
ggcggctggcgccagggggagggcggccgttcgagcgggatcggcgcgctgatgctcggc
gtcccggggcccggcggtctgcagttcgccgggcgcgtcggcaccggcttcaccgagaag
gaactggccaagctcaaagagctgctcaaaccgttgcacaccgacgaatcaccgttcgac
gaaccgctgccccggctcgacgccaggggagtgacgttcgtgcggcccgagttggtcggc
gaggtccgctacagcgaacgcaccaccgaccaccggttgcgccagccgagttggcgcggg
ctgcggcccgacaagacgcccgacgaggtggtgtgggagtga
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