KEGG   Methanococcus maripaludis X1: GYY_05675
Entry
GYY_05675         CDS       T01584                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmd  Methanococcus maripaludis X1
Pathway
mmd03030  DNA replication
mmd03410  Base excision repair
mmd03420  Nucleotide excision repair
mmd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GYY_05675
   03410 Base excision repair
    GYY_05675
   03420 Nucleotide excision repair
    GYY_05675
   03430 Mismatch repair
    GYY_05675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmd03032]
    GYY_05675
   03400 DNA repair and recombination proteins [BR:mmd03400]
    GYY_05675
Enzymes [BR:mmd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GYY_05675
    6.5.1.6  DNA ligase (ATP or NAD+)
     GYY_05675
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GYY_05675
DNA replication proteins [BR:mmd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    GYY_05675
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     GYY_05675
DNA repair and recombination proteins [BR:mmd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GYY_05675
   NER (nucleotide excision repair)
    Other NER factors
     GYY_05675
   MMR (mismatch excision repair)
    Other MMR factors
     GYY_05675
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Arc_PepC L27_2
Other DBs
NCBI-ProteinID: AEK20000
UniProt: G0H0B9
LinkDB
Position
1050438..1052159
AA seq 573 aa
MLFSDFCKILDKIEKTTKRLEKTDYFVELIDFIKNNEKPENLKQVSQITIGRVFAEFENK
EIGIGPNLLLEAVKTTGISEKDLKSKIKETGDIGTAVENLSSNIKQVSLFSQALTLEEVY
STLKKLSEIEGNSSQKKKTRIISNLLILADPVESRYISRLILEDMRIGMNIPTILASFSN
YFNVNKESVEKIYAVTNDIGLLGEKLISGSDIENDPELKLKVFRPIKPMLAQLTPSIEDA
MIETKMPQFETKYDGARVQVHKSNGDVKIYSRRLENITNSVPELVEEIKKLDIDNIILEG
ECVAMDLDSGKPRPFQDILRRFRRKYNIDKMAEKIALRIYFFDVLYYNRGLIDTPLKTRR
EILEKLFGTNNWDSELEKIKKEIFSNKMLFSSFKLNSDNPNLVKEFFNWSLSIGHEGIMI
KNPDAPYTPGSRVKTMYKVKPTLENLDVVVTRAKIGMGKRKDWYGSYELSVKDNDSNLHV
IGNVGSGLTEDDLEKLTKIVNEIKIEDLGEEVILEPKIVLEVTYEEIQTSEKYEMGYALR
FPRVVQIREDKSINDINTLDDVKKIYEIERNRK
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgctttttagtgatttttgtaaaattcttgataaaattgaaaaaactacgaaaagactt
gaaaaaacagactattttgtagaattaatcgattttatcaaaaataatgaaaaacctgaa
aatttaaaacaagtgtcacaaatcacgattggaagggtttttgcagaatttgaaaacaaa
gaaattggaattgggccaaacttgttgcttgaagcagtaaaaaccacaggaatatctgaa
aaagatttgaaatcaaaaattaaagaaacaggagacattggaactgctgttgaaaattta
agttcaaatataaaacaggtttcattgttcagccaagcacttacgcttgaagaagtgtat
tccacattaaaaaaactttcagaaattgaaggaaattcctcacaaaaaaagaaaacaaga
ataatttcaaatttactaattttagcagaccctgttgaatcaagatacatttcaaggctt
attttagaagatatgcggattggaatgaacattccaacaattttagcctcattttcaaat
tattttaatgttaataaggaatctgtcgaaaaaatatatgccgttacaaatgatattgga
cttttgggcgaaaagttaatttctggctcagacattgaaaacgatcccgaattaaaatta
aaagtattcaggccgataaaacctatgcttgcacagctaactccatcaattgaagatgcg
atgattgaaactaaaatgccccaatttgaaactaaatacgatggtgcaagagttcaagtg
cataaatcgaatggagacgtaaagatatacagcagaaggcttgaaaatattacaaattcg
gttcccgaactcgttgaagaaatcaaaaaactggatattgataatatcatattagaaggg
gaatgcgttgcaatggatttagattcgggaaaaccaagacctttccaagatattttaaga
aggttcaggcgaaaatataatattgataaaatggccgaaaaaatagctttaaggatatat
ttcttcgatgttttatactacaaccgaggtttaattgatactccgctaaaaacaagaagg
gaaattttagaaaaactatttggaacaaataactgggatagtgaactagaaaaaattaaa
aaagagatattttctaacaaaatgctcttttcatcgtttaaattaaacagcgataatcca
aatcttgtaaaggaattttttaactggagtttaagtataggtcatgaaggcattatgatt
aaaaaccctgatgcaccatacacccccggaagccgtgttaaaactatgtataaagttaaa
ccaacgttagaaaatcttgatgttgttgtaactcgtgcaaaaattggaatgggaaaaaga
aaagactggtacggttcatatgaactttccgtaaaagataatgatagcaacttacacgtt
atcggaaacgttggaagcggacttactgaagacgaccttgaaaaactcacaaaaatagtt
aatgaaataaaaatcgaagatttgggtgaagaagtaattttggaacctaaaatagtactt
gaagtaacttacgaagaaattcagacttctgaaaaatatgaaatgggttatgccttacgt
tttccaagggttgtccagataagggaagacaaatctataaatgacattaataccttagat
gatgtgaagaaaatatacgaaatagaacgaaacagaaaataa

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