Marinomonas mediterranea: Marme_0232
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Entry
Marme_0232 CDS
T01449
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Marme_0232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mme03021
]
Marme_0232
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_0232
Enzymes [BR:
mme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Marme_0232
Transcription machinery [BR:
mme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Marme_0232
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Marme_0232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FTO_CTD
Motif
Other DBs
NCBI-ProteinID:
ADZ89536
UniProt:
F2JX17
LinkDB
All DBs
Position
242395..246597
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDSIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLILDMTLRDIERVLYFESFIVIDPGMTTLDKGQLLNDEQYFEALEEFGDEFDARM
GAEAIQMLLRDMDMAEEINTMREELNATNSETRIKKLSKRLKLIEAFHNSGNNPEWMVLE
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMAFADIKEVHRAYGAK
QVELHAKVKVRINQVDTTLEGEKVPSTFIADTTVGRALLFDVVPDGLPFSVVNQPMKKKA
ISNLINQCYRKVGLKETCIFADQLMYTGFQYATASGSSVGVDDFVIPPEKAEIISRAEEE
VKEVEYQFADGLVTQGEKYNKVIDLWSRTNETVTDAMMKNLAKETVINKDGEEVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGSSDGITVNAMIEGGDVVVPLGQRVL
GRVVAQDVMDTKGELVLAAGTLIDEHHIRTIEAAGVDEMIVRSVITCDTKHGVCGKCYGR
DLARGHLVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKSAGTVRFH
KMKSIERENGQLVVASRSSELAIADEAGREKERYKLPYGAVLSVLDGDSVTAGQVVANWD
PHTHPIVSETQGRLEFSGMDEGVTIRRQSDEMTGLTTIEVLEMRDRPSAGKDLRPMIAVV
DESGNPVMIPGTDSPVQYMLPEKALLSLDHGATIKSGEVLARIPQESQGNKDITGGLPRV
ADLFEARRPKDPAIMAEATGVVGFGKETKGKIRLVINPQDGSDPIETLIPKWRQINIFDG
EEVAKGEIIADGPLNPHDILRLKGVEALADYITMEIQEVYRLQGVVINDKHIEVIVRQML
RKVDVGEAGDTDLIQGDQIEYTQLLDANEAAEADDKFPAKFERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHSERKNKKELAQAAKE
GSATVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacaaggacaatctgacgagtttgattcgatt
cgtatcggtctggcttcgccagatatgattcgttcgtggtcttacggcgaagttaaaaag
cctgagacgatcaactaccgtacgttcaagcctgagcgtgacggattgttctgtgcaaaa
atctttggtcctattaaggactacgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgtcatttgtgagaagtgtggcgttgaagttgctctgtctaaagtgcgccgtgag
cgtatggggcatatcgaactagcgtctccagttgctcatatttggttcttgaagtctctt
ccgtctcgtatcggtcttatcctagatatgacgctacgtgatattgagcgagtgctttat
ttcgaatctttcatagtaattgacccaggcatgacaacgcttgataaaggtcagcttttg
aatgatgagcagtatttcgaagcactagaagagtttggtgatgaatttgacgctcgtatg
ggtgctgaagctatccaaatgttgctacgcgacatggatatggctgaagaaatcaacacg
atgcgtgaagaattgaacgcaacaaactctgaaactcgtattaagaagctttctaagcgt
ttgaagttgattgaagcgttccataattctggtaacaacccagaatggatggtgcttgaa
gtactgccagtacttccgccagatcttcgtcctcttgtgccgctagaaggtgggcgtttt
gcgacgtctgacttgaacgatttatatcgtcgagtgatcaaccgtaacaaccgtttgaaa
cgtcttttagagcttgctgcaccggatatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgcattgcttgataacggtcgtcgtggtcgcgcaattaccggttctaac
aagcgtcctctgaaatctttggcagatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgcttggtaagcgtgtagactactctggtcgttctgtaatcaccgtaggtccttca
ttgcgtttgcaccagtgtggtcttcctaagaagatggcacttgagctgtttaaaccattt
atcttctctaaactagagctacgcggcatggcaacgaccattaaagctgcgaagaaaatg
gtagagcgtgaaacaccagaggtttgggatattctagatgaagttatccgcgaacaccct
gtaatgcttaaccgtgcgcctacattgcaccgtttgggtattcaagcgttcgaacctatg
ttgatcgaaggtaaagcgattcagttgcacccacttgtgtgtgcggcgtataacgctgac
ttcgatggtgaccaaatggcggtacatgtacctctaacaatcgaagctcagttagaagca
cgtgcattgatgatgtctacaaacaacatcttgtccccagcgaacggtgagccgatcatt
gttccttctcaagacgttgtattgggtctttactacatgactcgcgacaagatcaacgct
aaaggtgaaggcatggctttcgctgacatcaaagaggttcatagagcctatggtgctaag
caagttgaactgcacgcaaaagttaaagtacgtatcaaccaagttgatacaacgctagaa
ggtgaaaaagttccttcgactttcattgcagatacaactgttggtcgtgcgttgttgttt
gatgttgttcctgatggccttcccttctcggttgttaaccagccgatgaaaaagaaagcg
atctcgaacctaatcaaccaatgttaccgtaaggttggcttgaaagagacgtgtattttt
gcagaccagttgatgtataccggtttccaatacgcgacagcgtctggttcttctgttggt
gtggatgacttcgttattccgccagaaaaagctgaaatcatttctcgcgcagaagaagaa
gttaaagaagttgaataccagtttgctgatggtcttgtaacgcaaggcgagaaatacaac
aaggtaattgacctttggtctcgtactaacgaaaccgtaactgatgccatgatgaaaaac
ttggcaaaagagactgttatcaataaagatggagaagaggttgagcaacaatcttttaac
tctgtttatatgatggctgactccggtgcccgtggtagtgtcgctcagatgcgtcagcta
ggtggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacgcctattacg
gcgaacttccgtgaaggtctgtcggttcttcagtactttacctcgactcacggtgctcgt
aagggtcttgccgataccgcacttaaaactgcgaactccggttacctaacgcgtcgtctt
gtagatgttgctcaagatttggtaatcacagaagtagattgtggttcatctgacggtatt
accgtaaacgcgatgattgaaggtggagacgtagttgttcctcttggtcaacgtgtactg
ggtcgtgttgttgcacaggatgtaatggacactaaaggtgagcttgttcttgctgctggt
actttgattgatgagcatcacattcgcacaatcgaagcggcaggtgttgacgaaatgatc
gttcgctctgttattacttgtgatactaaacacggtgtatgtggtaagtgttacggtcgt
gatttggctcgtggtcacttggttaacattggtgaggctattggtgttgttgctgcgcaa
tctatcggtgagccgggtacacagcttaccatgcgtacattccacatcggtggtgcggca
tctcgtgcttcagcggtagatagtgttcaagtgaagagtgctggtaccgttcgtttccat
aagatgaagagcattgagcgcgaaaatggccaattggttgttgcttctcgttcatctgag
ttggctattgcagacgaagctggccgtgagaaagagcgttataagcttccttacggtgcg
gttctaagtgtgcttgacggtgattctgttactgctggtcaagtcgttgctaactgggat
ccacatacccacccaatcgtgtctgagacgcaaggtcgtcttgaattctctggtatggat
gagggtgtaactatccgtcgtcagtccgatgagatgacaggtttgactaccatcgaagtc
ttggaaatgagagatcgaccttcagcaggtaaagatcttcgtcctatgattgcggttgtg
gatgaatcaggtaatccagtaatgattcctggtacagattctccagttcaatacatgctt
ccagagaaagcgttattgagtttggatcacggtgctacgattaagtcaggtgaagtcttg
gctcgtatcccgcaagaatctcaaggtaacaaagatatcacgggtggtctgcctcgagta
gctgacctatttgaagctcgtcgtcctaaagatccagcgatcatggcagaagcgacaggt
gttgttggctttggtaaagagacgaaaggtaagattcgattggttatcaatccgcaagac
ggaagtgatccaattgagactcttattcctaagtggcgtcagatcaacatctttgatggt
gaagaagtggctaagggtgagatcattgccgatggtcctctaaaccctcatgatatctta
cgcttgaaaggtgtggaggctttggctgactacatcacaatggaaattcaagaagtatac
cgtttgcaaggtgtagtgataaacgacaaacacattgaggttatcgttcgtcaaatgctg
cgcaaagtggatgtgggtgaggccggtgatactgaccttattcaaggtgaccaaattgaa
tacactcaattgttggatgcgaacgaagctgcagaagcagatgacaagttcccagctaag
tttgagcgcgttctacttggtatcacaaaagcatctttggctaccgaatcctttatttct
gccgcgtcgttccaagaaacaacgcgtgtattaacagaaggtgcggtaaccggtaagaaa
gaccacttacgtggtctgaaagaaaacgttgtagtaggtcgacttatcccagcgggtaca
ggtttggcataccacagcgagcgcaagaacaagaaagaacttgcgcaagcagcgaaggaa
ggaagtgctacagtaagtgcttctgatgtcgaagaagcactaagtgccgctctaaaagac
taa
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integrated database retrieval system
