Marinomonas mediterranea: Marme_0517
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Entry
Marme_0517 CDS
T01449
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Marme_0517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_0517
Enzymes [BR:
mme01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Marme_0517
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Marme_0517
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Marme_0517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ADZ89813
UniProt:
F2K098
LinkDB
All DBs
Position
541438..542253
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTKRGIEPNIVNKTIQQVVIRQPKLRWPIPDAVNALSGQKVESVSRRGKYIG
VHTKAGTLIIHLGMSGSLYFVDAGTPPLFHDHVDIEFSDSPIVMRYTDPRRFGAMLWQPG
DWLEHELLKSLGPEPLTDAFHADYLYERAQGRKQAIKMFIMDSKVVVGVGNIYANEALFK
AGIHPKRAAGKISRARLEAFVASIKEVLSAAIEQGGTTLKDFVGGDGKPGYFKQELAVYG
RGGEKCISCSNELSEIRLGQRSTVYCNNCQT
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaacttcccgaagtcgaaaccacaaaacgtgggatcgagccaaatattgtaaat
aagaccatacaacaggttgtcattcgtcagcctaaacttcgttggccaattcctgatgcg
gtaaatgcattgtcaggtcaaaaggtagaaagcgtgtctagacgtgggaagtacattggt
gtccatactaaagcagggacattaatcattcacttaggtatgtctggtagtttgtatttt
gtcgatgcgggaacgccgccgctgtttcatgatcatgtcgatattgagttttcggattca
ccaattgtgatgcgttataccgacccacgtcgctttggcgcaatgctttggcaacctggc
gactggttggaacatgaattgcttaagagtctggggccagaacctctgactgatgcgttt
catgcggattacttgtatgaaagggcgcaaggacgaaagcaggccataaaaatgttcatt
atggacagtaaggtggtggttggtgtgggcaatatctatgcaaatgaagccttgttcaaa
gcgggtattcacccaaagagggcagcaggtaagattagtcgagcccgattggaagcgttt
gttgcatccataaaagaggtcttgtccgctgcaatagagcaaggtggtacaaccttaaaa
gactttgtgggtggtgatggaaaaccagggtatttcaaacaagaattggccgtttacggg
cgtggtggagagaagtgtataagctgctctaatgaactttcagaaatacgtttaggacag
cgaagtaccgtatattgcaataactgccagacatag
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