Malurus melanocephalus (red-backed fairy wren): 130577900
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Entry
130577900 CDS
T09178
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130577900 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmea03400
]
130577900 (LIG4)
Enzymes [BR:
mmea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130577900 (LIG4)
DNA repair and recombination proteins [BR:
mmea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130577900 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
130577900
NCBI-ProteinID:
XP_057229547
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPVSQSPXKKTVASHVPFADLCSTLERIQKCKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADIQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPATQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSNVFTPIKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRNKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNLFEDVEFCVMTGTGKYSKSELESRIAZCGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAXMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRVKNNKTMPLDLIAEIEERYSWNSRQLSIFRGSTXYVDCYAVVNEPQSKIPGTTLS
IRALDLRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKALRRTFGKKFKIVCDLWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgtttcacagtctcctsctaaaaaaacggtggcctctcatgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtgtaaatctcgtccagagaaa
accaagtatttcaaggattttcttgattcctggaggaaatttcatgatgcactycatcaa
aaagagaaagatgtcacagattctttttacccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaacaatgcttgcgaaactctatattgag
ctgcttcatttgccaaaagatggaaaagacgctgcaaagcttttaaattacagaacaccc
acgggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgtgata
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagccttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaractatattttccatttttcatcctgacgctgctgaattgcac
aatgttaccactgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttcwatcatgttgttttctgcctttaaaccgatgcttgctgctattgcagat
attcagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaaactggat
ggtgaacggatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttctccccttgaaggttcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgcgacacaaacctttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgygtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagyaacgtatttaccccg
ataaagggcaggatacatgttgtccataagagaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagccagacaaacgtggggaagggtggttaaaaatcaagccagagtatgtc
aatggattgatggatgaactggatcttttaattgttggtggttactgggggaaggggtca
cgtggtggaatgatgtctcattttctgtgtgctgttgcagagacgccccctccaaatgaa
aaaccgaccattttccactccatttgtcgcgtyggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggacccccct
ggtaacattttgtgtggaactgagaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaggaatggtatgagtgcatgact
tcagacatgttagaagatctcagaaacaaagcacaaggaaagctggcatctaagcacctt
catattgatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aagataattggaatagctgagcaatttaaagcccctgatctttctagtgtaagcaaggtt
tcaaatttatttgaagatgttgagttttgtgttatgacaggaacgggaaaatactcaaag
tctgagctggaaagcaggatagccsaatgtggtggcagtgtggtacagaacccaggtcca
gacacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcggagtggctcctacagtgttttcaaaccaaaatgctg
gtgccttggcaaccagccrttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgartatgattgttatggagacagttacacagcaaatacagatgttgcacagctcaag
gaagtgttctcaagagtgaaaaacaataagacaatgcctttggacttgattgcagagata
gaagaacgttattcgtggaacagtcgccagctcagtatattcagaggaagcactrtttat
gtggactgttacgctgttgttaatgagccccaaagcaaaatccctggaaccacactatca
attagagctttggacctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagcactcagg
agaacatttgggaagaaatttaaaattgtatgtgacctttgggtaacacattcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
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integrated database retrieval system
