Candidatus Mycobacterium methanotrophicum: M5I08_07965
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Entry
M5I08_07965 CDS
T08748
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M5I08_07965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_07965 (mfd)
Enzymes [BR:
mmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M5I08_07965 (mfd)
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M5I08_07965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UQX12212
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All DBs
Position
1467622..1471302
Genome browser
AA seq
1226 aa
AA seq
DB search
MTAPGPAGTTTPIAGLVEFALRAPTLQRLVDLAADRPDDLTLVGPAGARLVVASALARHG
PILVVTATGREADDLTAELRGVFGDSAAMFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PDDARLGPPLRVVVTAVRSLLQPMAPQLGLLEPLNLAVGEDTAADGGFEGVVTRLVELAY
TRVDMVAGRGEFAVRGGILDIFAPTAEHPVRVEFWGDEVTEMRMFSVADQRSMPEISVGH
LVAVACRELLLTGEARARAAELARQQPPPEHGGSGGVADMLAKLAEGIPVDGMEALLPML
RPDDLSLLTDQLADGAPVLVCDPEKVRTRAADLIKTGREFLEASWSVAALGGDSPIDVEQ
LGGSGFRELDEVRAATRRSGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLR
AHVSTGGVAAVVAPGTGTAHRVVEQLAESDTPATTLEPGAEPQPGVVGVLKGPLRDGLIV
GGPPGAGLVIITETDLTGNRITATDGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVE
MTERTVGGARREYLVLEYASSKRGRNDTDKLYVPMDSLDQLSRYVGGQAPALSRFGGSDW
TNTKTKARKAVREIAGELVSLYAKRQASAGHAFGTDTPWQAEMEDAFGFTETHDQLTAIT
EVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT
ERMAGFPVRIKSLSRFTDGSESRAVLDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDE
EQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIHEMSTILTPPEDRYPVLTYV
GPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDQAAARVRQMVPEAKVAVAHGQMPEDLL
ETTVEGFWNREIDILVCTTIIETGLDIANANTLIVERADTFGLAQLHQLRGRVGRSRERG
YAYFLYPQHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGV
GFDLYVRLVGEAVEAYRAAADGKTVTTAEEPKDVRIDLPVDAHLPPDYIPSDRLRLEGYR
RLAAAADNAQVDAVVEELFDRYGTLPETAQRLVAVARLRLLCRAVGITEVSAASAATVRL
APITLPDSAQVRLARMYPGARYRATTSTVQVPIPRAGGVGAPRIRDLELVQMVADLVSAL
DGKPGDSSRVDITKPSAMRSEERRAR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgccggaaccacgaccccgatcgcggggctcgtcgaattcgcg
ttgcgcgcgccgacgctgcagcgactcgtcgacctcgccgccgatcgacccgacgacctg
acgctggtcggcccggccggcgcccggctggtcgttgccagcgcgctggcccgacacggt
ccaatactggtggtcaccgcgaccggccgcgaggccgatgacctgaccgcagaactgcgc
ggcgtcttcggcgactccgccgcaatgttcccgtcctgggagacgctgccccacgaacgg
ctctcaccgggtgtcgacaccgtcggcgcccggctgatgctgctgcgccggctggcccac
cccgacgacgcccggctgggcccgccgctgcgggtggtggtcaccgcggtccgctcgctg
ctgcagccgatggccccgcagctgggcttgctggagccgctcaacttggccgtcggcgag
gacaccgccgccgacggggggttcgaaggggttgtcacccggctggtcgagctggcctac
acccgggtggacatggtcgctggacgcggcgaattcgccgtccgcgggggcatcctcgac
atcttcgccccgaccgccgagcacccggtgcgggtcgagttctggggcgacgaggtcacc
gagatgcggatgttctcggttgccgaccagcggtcgatgcccgagatcagcgtcgggcac
ctggtcgcggtcgcctgccgcgagctgttgttgaccggcgaggcgcgggcccgggccgcc
gagctggcccggcagcagccgccacccgagcacggcggcagcggcggtgtcgccgacatg
ctggccaaactcgccgagggcatcccggtcgatgggatggaggcgttgctgccgatgcta
aggcccgacgacttgtcgctgctgaccgaccagctggccgacggcgcaccggtgctggtc
tgcgacccggaaaaggtccgcacccgggcggccgacctgatcaagaccgggcgcgagttc
ctcgaggcgtcctggtcggtggccgcgttaggcggcgattcgcccatcgacgtcgagcag
ctcggcggctcgggattccgcgaactcgacgaggtgcgggccgctacccggcgatccggc
cacccgtggtggacgctgagccagctttccgatgagtcggcgatcgagctggacgtccgg
gccgcgccgtcggcccgcggtcatcagcgcgacatcgacgagatctttgcgatgctgcgt
gcccatgtgtcgacgggtggggtcgccgcggttgtcgcgccgggaaccgggaccgcacac
cgggtggtcgagcagctggccgaatctgacacgcccgcgacgacgttggagccgggagct
gaaccccagccgggcgtggtcggggtgctcaaaggcccgctgcgcgacggcttgatagtc
ggcgggccgccgggtgcagggctggtcatcatcacggagaccgatctgaccggcaaccgg
ataaccgcaacggacgggaaaaggcttgccgctaaacgccgtaacactgtcgacccgctg
gctttgaccgccggcgacttggtggtccacgaccagcacggcatcggccgattcgtggag
atgaccgagcgcaccgtcggcggagcccggcgagagtatctggtgctggagtacgcgtcg
agcaaaagaggccgcaatgacaccgacaagctttatgtgccaatggattcgctggaccag
ctgtcccgctatgtcggtgggcaggcgccggcgctgagccggttcggcggcagcgactgg
accaacaccaagaccaaggcccgcaaagcggtcagggagatcgccggcgagctggtgtcg
ctgtacgccaagcggcaggcctcggcgggacacgcgttcggcacggacaccccgtggcag
gccgaaatggaggatgccttcggcttcaccgaaactcatgaccagctgactgcgatcacc
gaggtcaaagcagacatggagaaaccgatcccgatggaccgggtgatctgcggcgacgtc
ggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaag
caggtcgcggtgctggtgcccaccacgctgctggccgatcagcatctgcagaccttcacc
gaacggatggcaggcttcccggtccggatcaaaagcttgtcgcgcttcaccgatggcagc
gaatcgcgcgcggtgctcgacgggctggccgacggttcagtggacatcgtcatcggcacc
catcggctgttgcagaccggggtgcggtggaaggacctcggcttggtggtcgtcgacgag
gaacagcgcttcggcgtcgagcacaaggagcacatcaagtcgctgcgcacccatgtcgac
gtgctgacgatgagcgccacccccatcccgcgcacgctggagatgagcttggccgggatc
cacgagatgtcaactattttgacgccgcccgaggaccgctacccggtgctgacctacgtc
gggccgcacgacgacaagcaagtcgccgcggcgctgcgcagagaactgctgcgcgacggg
caggctttctacgtgcacaaccgggtcagctccatcgaccaggcggcggctcgggtgcgg
cagatggtgcccgaggcgaaagttgccgtcgcgcatggacaaatgcccgaggacctgctg
gaaaccaccgtcgaaggtttctggaaccgcgaaatcgacatcctggtgtgcaccacgatc
atcgagaccggtctggacatcgccaacgccaacaccttgatcgtcgagcgcgccgacacc
ttcgggctggcccagctgcaccagctacgaggccgggtgggccggagccgcgaacgtggt
tacgcctatttcctttatccccaacacgccccgctgacggagaccgcctacgaccggttg
gcgacgatcgcacagaacaacgaactcggcgccggcatggcggtggcgatgaaggatttg
gagattcgcggcgccggcaatgtgctgggtgtcgagcagtccggacatgtcgctggggtc
ggctttgatctgtatgtgcgactggtgggcgaggccgtcgaggcttatcgcgccgcggct
gacggaaagaccgtcactactgccgaggaacccaaagacgtgcggatcgacttgccggtc
gacgcgcacctgccgccggactacatccccagcgatcggctccggctggagggctaccga
cggctggccgccgcggccgacaacgcccaagtcgatgctgttgtcgaagagctttttgac
cgctacggcacgctgcccgaaaccgcgcagcggctggtggcggtggcacggctccggctg
ttgtgccgggccgtcggcatcaccgaagtgtcggcggcgtcggcggccacggtgcggctg
gcgccgatcaccctgccggactccgcgcaggtgcgattggcgcggatgtatccgggtgcg
cgttaccgggcgacgacgtcgacggtgcaggtaccgattccgcgcgccggtggcgtcggc
gccccacgaatccgtgatctcgagctggtgcaaatggtggccgatttggtatcggcgctg
gatggaaagccgggagattccagcagggttgatataacaaaaccgtcggctatgcgcagt
gaggagcggcgagcaaggtga
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