Mesorhizobium mediterraneum: LRP31_03475
Help
Entry
LRP31_03475 CDS
T09205
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LRP31_03475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmei03400
]
LRP31_03475 (ligD)
Enzymes [BR:
mmei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LRP31_03475 (ligD)
DNA repair and recombination proteins [BR:
mmei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LRP31_03475 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WIW54321
LinkDB
All DBs
Position
complement(745400..747934)
Genome browser
AA seq
844 aa
AA seq
DB search
MASLEQYHAKRDFKKTAEPAGKVVRSRKGEAGGIFVIQKHAATRLHYDLRLEHNGVLWSW
AITRGPSLDPHEKRFAVHVEDHPIDYASFEGTIPKGEYGGGSVIVWDEGRWQPETDPAQA
MKKGHISFELHGHKLNGLWHLVRLKPRPGKTRDNWLLIKSDDVAARPGEDILQEAPESVK
SGLTIEEVGEGKTADGKKPRVWHSNKRLASKAKAKAAKQLEFIEPCLATLQRDAPPGKEW
LHEVKFDGYRMQAQLAGTEVRLLTRTGLDWTDKFGGEIVAELGRLKCMDAIIDGEIVVLA
DSGVSSFALLQADLSARRTDRFLYYVFDLMRLDGEDMRTEPLVERKQALQDLLGKQPDNS
AVRFSDHFAEPGKVMLEHACRMGLEGIVSKRADAPYRSGRGLSWVKSKCTLRQEFVIGGY
LPSEKTGRGLRSLLVGYHEGGKLHYAGRVGTGFSMQGTNDLKKKLDALKAKTSPFDRALP
RGKGLGKGVVWVKPDLVGEVEFRTWTSDRIIRHASFQGLREDKPAEEVVQEKPKAPAGKA
DTKEKPAGGKGTSVESSGAAKTVVKLSHPDKLLRPHEKVSKQGLLDHYALVWPRLQQFVV
NRPLSLVRAPDGVEGQRFFQKHASAGMHDKIARMKDPTDGEEILFIRDFDGVAALVQLGV
VEIHIWGCTIDELDKPDQIIFDLDPDEGVDVKAVRAAALEIRGRLDELSLPNFVKTSGGK
GYHVVVPLKPSADWDEVKDFAHDFARALEQAAPDRYTATLSKKARTGKIFVDYLRNSRGS
TTVAPYSSRAKKGATVSMPATWAEIEAGLAPNAFPIGDKTTLKQLAEADPWKDFFRQGKV
LKRG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggccagccttgagcagtatcacgccaagcgcgatttcaagaagaccgccgagccggcc
ggcaaggtcgttcgcagcaggaaaggtgaggccggcggcatctttgtcatccaaaagcac
gccgcgacacggctgcattacgaccttcgcctcgaacacaatggcgtgctgtggagctgg
gcgataacccggggcccgagcctcgatccgcatgaaaagcggttcgccgtgcatgtcgag
gaccacccgatcgactacgcgtccttcgagggcaccattcccaagggcgaatatggcggc
ggctcggtcatcgtctgggacgaaggcagatggcaaccggaaaccgatccggcccaggcg
atgaaaaagggccatatcagcttcgagttgcatggccacaagctgaacggtctctggcat
ctggtgcgcctgaagccgcgtcccggcaaaacgcgcgacaattggctgctgatcaaatcc
gacgatgtcgccgcccggccgggcgaggacattttgcaggaggcgccagaatcggtgaag
tcgggcctgacgatcgaggaggtcggcgaaggcaagaccgccgatggcaagaagccaagg
gtctggcattcgaacaaacggctcgctagcaaggcgaaggccaaggcggcaaagcagctc
gaattcattgaaccatgcctcgccacactgcaaagggatgcccctcccggcaaggaatgg
ctgcatgaggtgaaattcgacggctaccgcatgcaggcgcagcttgccggcaccgaggtg
cggctcttgacgcgcaccggccttgactggacggacaagttcggcggcgagattgtcgca
gaactcgggcgcctgaaatgcatggatgccatcattgacggcgagatcgtcgtgctggcg
gacagcggcgtctcgtccttcgcgctgctccaggcggatctgtcggcgcgccgcacggat
cgttttctctattacgtcttcgacctgatgcgtctcgatggcgaggatatgcgcacagag
ccgctggtcgagcgcaagcaggctttgcaggacttgcttggcaaacagccagacaattcg
gcagtccgcttcagcgaccattttgccgaaccgggcaaggtcatgctggagcacgcctgc
cgcatggggctggaggggatcgtctccaagcgcgccgacgcgccctatcgcagcggccgc
ggcttgtcctgggtgaagtcgaaatgcacgcttcgccaggaattcgtcatcggcggctac
ctgccgtcggagaagaccgggcgtggattgcgctccttgctggtcggctaccatgagggc
ggcaagctgcactatgccggccgtgtcggcaccggcttttcgatgcagggcaccaacgac
ctgaagaagaagcttgatgctctgaaggcgaagacctcgcccttcgacagggcgctaccg
aggggcaaagggctgggcaaaggagtggtttgggtgaagccagaccttgtcggcgaagtg
gagttccgtacctggacgtccgaccgtataatacgccacgcctcgttccagggattgcgc
gaggacaaaccggcggaggaagtcgtgcaggaaaagccaaaggcacccgcaggcaaggcc
gataccaaggaaaagcctgccgggggcaagggcacctctgttgaatcctcgggggcggca
aaaaccgtcgtaaagctttctcatcccgacaagcttctgcggccgcacgagaaggtatcg
aagcagggcctgctcgatcattacgctttggtctggccgcgcctgcaacaattcgtcgtc
aatcggccgctaagcctggtgcgtgcgccggacggcgtcgagggccagcgctttttccag
aagcatgcatcggccggcatgcatgacaagatcgccaggatgaaggatccgacggacggc
gaggagatcctgttcatccgcgacttcgacggtgtcgctgccttggtccagctcggcgtg
gtcgagatccatatctggggctgcaccatcgacgaactggataagccggaccagatcatc
ttcgatctcgatcccgacgaaggcgtcgacgtgaaagcggtgcgcgcggcggcgctcgaa
atccgcggtaggctcgatgagctgtccttgccgaatttcgtcaagacgtcgggtggcaag
ggctaccatgtcgtcgtgcctctgaaaccatcggcggattgggatgaggtgaaagacttc
gcccatgatttcgcccgcgcgctggaacaggcggcacccgaccgctacacggcgacgctg
tcgaagaaggcgcgcaccggaaaaatcttcgtcgactatctgcgcaatagccgcggctcg
accacggtggcgccttattcgtcgcgggccaaaaagggcgctaccgtatcgatgccggcg
acctgggcggagatcgaggccggactggcgccgaacgcatttccgatcggcgacaagacg
acgctgaagcagttggccgaagccgatccgtggaaggattttttcaggcagggcaaggtg
ctcaagcgcggctag
DBGET
integrated database retrieval system
