Mesorhizobium mediterraneum: LRP31_19650
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Entry
LRP31_19650 CDS
T09205
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRP31_19650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmei03400
]
LRP31_19650 (mfd)
Enzymes [BR:
mmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRP31_19650 (mfd)
DNA repair and recombination proteins [BR:
mmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRP31_19650 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WIW51298
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All DBs
Position
4051789..4055286
Genome browser
AA seq
1165 aa
AA seq
DB search
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAAHEIAPDKPVLFVARDGQRLPSIIEA
LSFAAPGLPVLELPAWDCLPYDRVSPGADAAARRLDALTAMIALVKKPHRAVILTTANAL
LQRIPPASLVEAQTFHAKPGNQIDMNGLVSRLEISGFERVPTVRGVGEFAVRGGILDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTIGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPSRDDGLYAAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALTER
HALILDHYEARRKQADGALKDAVPYKPVPPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GARKIFHAGSRHGRSFVEERADPNVNVFDVVVKHIADERAARRRVVIAGWTEGSLDRLGQ
ILAEHHLGNLKPVATLAEAEKLETGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRPSDFIAEASALSSGDIVVHTDHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKARLKKRLLDMAGQLIRIAAERQMRAAPS
LVPADGLYGEFSARFPYEETDDQQTAIDSVMGDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVAQASRLVGAKDLAEAKKGIAEG
TVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKSDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRLAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
AEIHDFLRESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIVHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPEEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVTFIGEQGSLAKIRPDHSVVFSRDW
STPEKRLAGSAVVMTQLARLAEKVA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgatccccaccatcggcctgccgaaaggccgcgccggccagttcatcgtcgac
ggtgtcgccgacggttacgaagcctttgcgctggtgcaggccgcgcacgagattgcgccc
gacaagccggtgctgttcgtggcgcgcgacggccagcgcctgccttcgatcatcgaggcg
ctttcattcgcagcgccaggcctgcccgtgctcgagctgccggcctgggattgtctgcct
tacgaccgcgtctcgcccggagcggatgctgccgcgcggcgtctggacgcgctcaccgcg
atgatcgcgctggtgaaaaaaccgcaccgcgccgtcatcctgaccaccgccaatgcgctg
ctgcagcgcattccgccggcaagcctcgtcgaggcacagacatttcacgcaaaacccggc
aaccagattgacatgaatgggctggtgtcgcggctggagatatcaggcttcgagcgggtg
cctacagtgcgcggcgtcggcgagtttgccgtgcgcggcggcattctggacctgttcgca
ccgggctggacggaagcgctgcgcctcgatttcttcggcgacacgctggaatcgatccgc
gtcttcgacgccgccacgcagcgcaccatcggccaacgcaagtcgatggcgctgcaggcg
atgagtgaagtggcgctgacgccggagaccatcagccgtttccgccgcagctacatcgaa
gcctttggcgcgccctcgcgcgacgatgggctctatgcggcggtcagcgagggacggcgt
ttcgccggcatggagcactggctgccgttcttctacgagcggctggagacggtgttcgac
tatctgccggacacgcctgttgtgttcgaccatctggcgcatgaggcgctgactgagcgc
catgcgctgatcctcgaccattacgaggcgcgcaggaagcaggccgacggcgcactgaag
gatgccgtgccatataagccggtgccgcccgacctgctttatttgtcgcccgaaaacctc
atcgcctcgcttggcccgcgcgaagcgatcgacttcacgccgttcgatgcgcccgacgcc
ggcgcgaggaaaatcttccatgccggctcgcggcatggccgcagcttcgtcgaggaacgc
gccgaccccaacgtcaacgtcttcgacgtcgtcgtaaaacacattgccgatgagcgggcc
gcccgccgccgcgtcgtcatcgccggctggaccgaaggttcgctcgaccggcttggccag
atcctggctgaacatcatctcggcaatctcaagccggtcgccacgctggccgaggcggaa
aagctcgagacggggcaggcggcacttgccgtgctgccgctcgaatccggcttcgagacc
gagaaactggtcgtcgtcgccgagcaggacattctgggcgaccggctgatccgccgctcg
aagcgcaagaagcgtccttccgacttcatcgccgaggcctcggcgttgtcctccggcgat
atcgtcgtccataccgaccacggcattggccgcttcatcgggctgcgcaccatcgaggcg
gttggtgcgccgcatgattgcctcgagatccattatgccggcgatgatcggctgttcctg
ccggtggagaacatcgagcttctgtcgcgctatggctcggattcggccgaagcgacgttg
gacaagcttggcggcggcgcctggcagtcgcgcaaggcgcggctgaagaaacgcctgctc
gacatggccggacagttgatccgcattgccgccgagcggcagatgcgcgccgctccttcg
ctggtgccggcagatggtctctacggcgaattctccgcgcgtttcccctacgaggaaacc
gacgaccagcagacggcgatcgattcggtcatgggcgatctgggcgcgggaaagccgatg
gaccggctgatctgcggcgacgtcggcttcggcaagaccgaagtcgcccttcgtgccgcc
ttcatcgcggcgatggaagggtttcaggtcgcggtggtggtgccgacgacgctgttgtca
cgccagcatttcaagaccttttcgcagcgcttttccggcctgccgatccgcgtcgcccag
gcatcgcggctggttggagccaaggacctggccgaggccaagaagggtatcgccgaaggc
acggtcgacatcgtcgtcggcacccatgcgctgctcggctcgtcgatctcgttcaagaat
ctcggcctcctaatcattgacgaggagcagcattttggcgtcaagcacaaggaacggctg
aaggatttgaagagcgacgtgcatgtgctgacgctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgttgaccggggtgcgcgaactgtcgctgatcgccacgccgccggtcgat
cgcctggcggtgcgcaccttcatctcgcccttcgacccgctggtcatccgcgagaccctg
ctcagggaacgctaccgaggtggtcattccttttatgtcgtgccgcgcatcagcgatttg
gcggaaatccatgatttccttcgggaatcggtgcccgagctgaaagtggctgtcgctcac
ggccagatgccgcccggcgagctcgacgacatcatgaacgccttctacgacggccagtac
gatgtgttgctgtcgacaaccattgtcgaatccggcctcgatatcccgaccgcgaacacg
ctgatcgtgcatcgcgccgacatgttcggcctgtcgcagctctaccagttgcgcggccgc
gtcgggcgctcgaaggtgcgcgcctatgcgctgttcacgctgccggccaatcgcaagttg
accgacaccgccgagcgccggctgaaggtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagtcacgatctcgatatcagaggcgccggcaatcttctcggcgaagag
caatccggccacatcaaggaggtcggcttcgagctttaccagcagatgctggaagaagcg
gtcgccgaggtgaaggattccggcgaagtgcaggatggcggttggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgttccggatctgcagctgcggctggcg
ctctatcgccgcctcggcgatctcgaaaacaccgaggagatcgatgctttcggcgccgag
ctgatcgaccgcttcggcccgttgccggaggaggtgaagcatctcttgaagatcgtcttt
atcaaggcgctctgccgcaaggccaatgtcgaaaagctcgatgccgggccaaagggggtc
gtcatacatttccgcaagcgcgagttttccaatcctgtcgggctggtcacgttcatcggc
gagcagggctcgctggccaagatccggccggatcacagcgtcgtcttcagccgcgactgg
tctacgcccgaaaagcggctggcggggtccgccgtcgtcatgacgcagctggcaagattg
gcggagaaggtggcttaa
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