Methylococcus mesophilus: OOT43_04860
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Entry
OOT43_04860 CDS
T09468
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmeo
Methylococcus mesophilus
Pathway
mmeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OOT43_04860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeo03400
]
OOT43_04860 (mfd)
Enzymes [BR:
mmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OOT43_04860 (mfd)
DNA repair and recombination proteins [BR:
mmeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OOT43_04860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_30
DUF1474
AAA_22
DUF2585
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UZR29972
LinkDB
All DBs
Position
1078942..1082418
Genome browser
AA seq
1158 aa
AA seq
DB search
MKPQASSSSLSSPLKPALPISRRQALCWSGLHGCSDSLAIASAFDASPGLFLVVTADAQS
ALRIEQEVRTFLGGEAAILPFPDWEILPYDVFSPLPEITSQRLRTFYELSRVQHGLLVTP
VSTLMHRVAPRTHTLANTFSIRAGSAVNIDQTRQTLESVGYQCVSQVYQHGEFAIRGSIL
DLYPMGSETPYRVELFDEEVETIRTFDPESQRSIEKVAGIELFPAREFPFDDAAIKRFRQ
KFRAEFPDAVSRSVLYQDVSKGIAAGGIEYYIPLFVERMDTLFDYLPGDATLILHGDVEQ
AAAAYYAEAASRHQQRIHNLDRPPLPPARLFLEPETLTSSLASFSRIAIQPADAAPAAAA
VRFDCAPPPALHPETKTQPPYEPLQRFIGEFAGKILLVAESAGHRETLAANLAKCRIRPR
IVDGWADFLAAPDPLCLMVAALDHGLVVSEPPLAIVTEAQISGDKAQQRRRRQRTQSKDF
GQFLRSLEELEIGAPVVHREHGVGRYLGLQRIQTGGVESEFLTLRYANDDKLYVPVSALG
MVSRYAGSDPDHAPLHRLGSEQWAKARRKALEQVRDVAAELLDIHAKRAAASGKSFATLT
EEYAGFAAQFPFEETPDQETAIQDVIRDLAAARPMDRVVCGDVGFGKTEVAMRAAFIAAQ
NGRQVAVLVPTTLLAQQHYKNFCDRFADWPMRIEVLSRFVSKKEQTQAIADIGEGKIDIV
IGTHRLLQKDVRFKDLGLVIIDEEHRFGVAHKEHFKKLRSEVDFLALTATPIPRTLDMAL
TGLREISIIATPPPHRHVIRTFVTEWDDALVQEALNREIKRGGQVYFVHNKIETQPKLAE
RLEKLVPGVRTRIAHGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILIDR
ADTFGLAQLHQLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLEAIEAAGELGAGFLLSS
QDLEIRGAGELLGEDQSGQIQEIGFTLYTELLERAVNALKSGRQPELETDHLGGTEVDLQ
CAALIPDEYLPDVHTRLVLYKRIANARDDDEMRELQIEMIDRFGLLPDATKNLFAVSTLK
NEAAKLGIAKIEAGAGGGRLIFEAQPNIDPAAIILLIQKQAATYKLDGPDKLRFIAKLPT
PAERVQFVETLLGRLAAK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccacaagcctcttcttcctccctgtcctcgccgttgaaacccgccttgcccatc
tcgcgccgccaggcgctttgttggagcgggctgcacggctgcagtgattcccttgcgatc
gcctcggcgttcgatgcgtcacccggcttgtttctcgtcgttaccgccgacgctcagagc
gctttgcgcattgaacaggaagtgaggacttttctcggcggagaggcggcgattctccca
ttccccgactgggaaatccttccctacgacgtgttttccccgctgcctgaaatcacctcc
cagcggctgcggaccttttatgaattatcccgcgttcagcatggcctgctcgtcacgccg
gtatccaccctgatgcatcgggtagccccgcggacccacaccctggccaatacgttttcc
attcgcgccggcagcgccgtgaatatcgaccagacccggcagacactcgaaagcgtaggc
taccaatgcgtgtcgcaggtataccagcacggcgaattcgcgatccggggctcgatactc
gacctttaccccatgggcagtgaaacgccttatcgggtcgagctgttcgacgaggaggta
gaaacgatccgcaccttcgatcccgaaagtcagcgctcgatcgaaaaagtggccgggatt
gagcttttccccgcccgggaatttccgttcgacgatgctgccattaaaaggttccggcag
aaattccgggccgaattcccggatgcggtgagtcgcagcgtcctgtaccaggacgtcagc
aagggaatcgcggccggcgggatcgaatactacatacctctgttcgtggaacggatggat
acgctgttcgattacctgccgggcgatgcgaccctgatattgcacggcgacgtcgagcag
gccgccgcggcctactatgccgaagccgccagccgtcaccagcagcgcatccacaatctg
gaccggccaccgctgcccccggcccggctgtttctggaacccgagacgctgacctccagc
ctcgcgtccttcagccgcatcgccatccagccagcggacgccgctcccgccgccgccgcg
gtgagattcgactgcgctccgccgccggcactgcatcccgaaaccaagacccagccaccc
tacgagccgctgcaacgcttcatcggggagttcgccggaaaaatcctgctagtcgcggaa
tccgccggccaccgtgaaactctcgcggcgaatctcgccaagtgccggatccgtcccagg
atagttgacggctgggccgacttcctcgccgctcccgatccgctgtgcctgatggtcgcc
gctctcgaccacgggctggtcgtttccgagccgccgctcgcgatcgtgaccgaagcccag
atctccggcgacaaggcccagcagcgcaggcgccggcaacgcacacaatccaaggatttc
ggccaattcctgcgcagcctggaagagctggaaatcggcgcaccggtggtgcaccgcgaa
cacggcgtcggccgctatctcggcctgcaacggatccagaccggaggagtggagtcggaa
ttcctgaccctgcgctacgccaacgacgacaagctctacgtgccggtatcggccctaggc
atggtcagtcgctacgccggctcggacccggaccacgcaccgctgcaccgcctgggcagc
gagcaatgggccaaggcccggcgcaaggcgctggaacaggtccgcgacgtcgccgccgaa
ctgctcgacatccacgccaaacgtgccgctgcgagcggcaagagcttcgccaccctgacc
gaggaatatgcaggctttgccgcccagttcccgttcgaggaaacgcccgaccaggaaacc
gcgatccaggacgtcatccgcgacctcgccgccgcccgtccgatggaccgggtggtctgc
ggcgacgtcggcttcggcaagaccgaggtcgcgatgcgggccgccttcatcgccgcccag
aacggccgccaggtcgccgtgctggtcccgacgaccctcctggcccagcagcactacaag
aacttctgcgaccgcttcgccgactggccgatgcggatcgaggtgctgtcgcgcttcgtc
tccaagaaggagcagactcaggccatcgctgacatcggcgagggcaagatcgacatcgtc
atcggcactcatcgcctgctgcagaaggacgtccgattcaaggatctggggctggtcatc
atcgacgaggagcatcgcttcggcgtcgcccacaaagaacacttcaagaaactgcgcagc
gaagtggacttcctggcgctgacagccacgcccattccccgcaccctggacatggccctg
accggcctgcgcgagatttccatcatcgccaccccgccgccgcaccgccacgtcatccgc
accttcgtcaccgaatgggacgacgccttggtgcaggaagccctcaaccgcgagatcaag
cgcggcggccaggtctatttcgtgcacaacaagatcgagacccaacctaagctggcggag
cggctggaaaagctggtgcccggcgtgcgcacccgcatcgcccacggccagatgccggag
cgcgagctggaaaacatcatgctggacttctaccaccagcgcttcaacgtgctgctttgc
accaccatcgtggaaagcggcatcgacgtgcccagcgccaacaccatcctgatcgaccgc
gccgacaccttcggcctggcccagctccaccagttgcgcggacgggtcggacgctcccat
caccgcgcctacgcctatctgctggtgccgccgaaaaaagccatgaccgccgacgcggtg
aagcggctggaagcgatcgaggcagcgggcgaactcggcgccggcttcctgctgtcctcg
caggatctggagatacgcggcgccggcgagttgctgggcgaggaccagagcggccagatc
caggaaatcggcttcaccttatatacggaattgctggagcgcgccgtcaacgccctgaaa
tccggcagacagccggagctggagaccgaccatctcggcggcaccgaagtcgacctgcaa
tgcgccgcgctgatcccggacgaatacctgcccgacgtgcacacccgtctggtgctgtac
aagcgcatcgccaacgcccgcgacgacgatgagatgcgcgagctgcagatcgagatgatc
gaccgcttcggcctgctgccggacgcgaccaagaacctgttcgcggtcagcacgctgaag
aacgaggccgccaagctgggcatcgccaagatcgaagcaggcgctggcggcggccggctg
attttcgaggcccagcccaacatcgacccggccgcgatcatcctgctgatccagaaacag
gccgccacttacaagctggacggcccggacaaacttcggttcatcgccaagctccccacc
ccggcggagcgcgtccagttcgtggaaacgctgctgggccggctggcggcaaagtga
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