Mercenaria mercenaria (northern quahog): 123547066
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Entry
123547066 CDS
T07835
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmer04131
]
123547066
Membrane trafficking [BR:
mmer04131
]
Protein recycling
Others
Others
123547066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR
BNR_6
DUF2529
Motif
Other DBs
NCBI-GeneID:
123547066
NCBI-ProteinID:
XP_045189770
EnsemblRapid:
LOC123547066
LinkDB
All DBs
Position
9:complement(48501935..48549286)
Genome browser
AA seq
1147 aa
AA seq
DB search
MARNQNIMCVVFICIFHVNPLSGKIFSRSLSEFRLFQQPSVLFNNDNMNLRTKRSSNSSE
NSTTDHADVFHSQKNNLSTTSFALHGEIDNEAFVHWSGENNDTVFVLTRSHRHGAVHSST
LWRSIDYGESYSKINLPQLFTVSYMYSSLADKSKIILSDLIQRQLYITEDTGQTWKHVKL
NFSPYRILLHPSIANFILAYSLREMKLYVSKDFGATWKLMMERVTERFFWAVDGVDHNPN
IVHMELQDPMGPVTYFACIAPNCDKAEYDKTLGTIDFYSLVVENEYIFVQKSTDDLTSFF
VSYKRGPFKRAYFPSNLTPLDFNIVDTSDHQVFIAVDHEEDIANLYLSDVTGQFYVMSVE
NVVGLRYPGKFDVDLVKVKGLNGIYIINKFETSRVDGGVFSQRTYITFNKGGMWKLLSAP
EESKQNCMDTEKCNLHLHIGNTNQFFRIPMAVCTEEAPGLILAHGSVGEFLDMDSHVFIS
RDAGFTWKAAPFKGNHFLNIMDQGSAISAVAAHGLPTNQVHFSCTEGASWVTHNITSSEM
NVDGVVNEPGIKTLISSVFGHMNSSNGWVMVKMDFGSVLDRKCGFDDFELWQPSADLVEN
NVRCIMGENVVYERRKQLSECYYGADYFRPKSAQICSCEREDFECDFGYDVGTDGTTCIK
SAWFKEDQFPGPHCINGKYNHSKGYRKVAASKCNGGKESKYLPVETDCPLLAPRGITIYS
EKKCIQRGVNVTFRLTQESGSADETVYTWTFGNESSPVTIKGLHNAASITTSFSTIGKYN
ITVLAVNSKGTAQAVLPIHVEEGLKGVLVEIPWGARTGMPSYFNVTVLGSDNITKLGKEQ
SLHFAWHFENKMTGDIRQLTWQNVIQQEFNEPGEYKLTLNVFNSVSSVFYTQSVEVYDDM
TTVRLHFSEEINNYNSSSLNVRQALAEILCHNLAQILEIRRSRIIMSVPPTQPVVGDLTV
LPPKRDINETETYQVVEMLIDQAKQQYLAFPLFTSDDIVIITDAGILDLRTGAESSTIPP
PPATVTVMVPVHVNVTTVQEKHSLVAVYISVPVLISVIGLAVAIIFYYRKKLKSHKKYYP
IVKHRSRIHHDSTCSCGEEDILGLEDPDDSIIPDSEYPDNQPTLMILNEPRSSRTERSPD
RVGLVNC
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggaatcaaaacatcatgtgtgtagtatttatttgcatttttcatgtaaatcct
ttatcgggaaagattttcagtcgatctttaagtgaatttaggcttttccaacagccaagt
gttttatttaataacgacaacatgaatttacggacgaaaaggagcagtaactcaagtgag
aattctactacggaccatgcggatgtctttcattcacaaaaaaataatttgtccacaacc
tcgttcgctttgcacggggaaattgataatgaggccttcgtacactggagtggggaaaac
aatgatactgtttttgttctaaccagaagtcacaggcacggtgctgtacattccagtaca
ctatggaggtccattgactatggagaatcctacagtaagataaatttaccacaactgttt
acagtcagttacatgtattcatcacttgcagacaaatcaaagataattctgtcagattta
attcagagacaattatacataacagaggacactgggcagacatggaagcacgtgaaactg
aacttctctccttacaggatacttctgcacccgtccatagcaaattttattctggcttat
agtttaagagaaatgaagttatatgtgtccaaagattttggtgctacatggaagttgatg
atggagcgtgtgacggagaggttcttctgggcggtggacggcgtggaccataatcctaac
attgttcatatggaattacaggaccccatgggaccggtcacttactttgcttgtatagcc
ccaaattgcgataaagctgaatatgacaaaacgttgggaactatagatttctactcacta
gttgtggagaatgaatacatctttgtacagaagtcgacagacgacctgacgtcctttttt
gtgtcttataagaggggaccgttcaagagagcatactttccatcaaatttaacaccactg
gatttcaatatagtggacacaagtgaccatcaagtgtttatagcagttgaccatgaggag
gatatagccaatctttacttgtcagacgtcactggacagttctacgtaatgtctgtagaa
aatgtggtcggtcttcgatatccaggaaaatttgatgtagatctagtgaaggttaagggt
ctaaatggtatatatataataaacaagttcgagacatctcgtgttgatgggggcgtgttt
tctcagcgtacctatataacattcaacaagggagggatgtggaaactgctcagtgcacct
gaagaatcgaaacagaactgcatggatacagagaaatgtaacttacatcttcatatagga
aacacaaatcagtttttccggatccctatggctgtatgtacagaggaagcgccaggcttg
atccttgcccacggtagcgtcggagagtttctagacatggattcacatgtttttatcagc
cgtgatgcaggattcacatggaaagcagcaccattcaaagggaatcattttctcaatata
atggatcaggggagtgcaatatcagctgtagcagctcacggtttaccaactaatcaagtt
catttttcatgcactgagggagcttcatgggtaacacataacattacaagctcggagatg
aatgtggatggtgtagtcaatgaacccggaataaaaactttaatatcaagtgtatttggt
catatgaactcgagtaatggctgggttatggtgaagatggattttggatctgtgctggat
cgtaagtgtggcttcgatgattttgaactgtggcagccatcagctgatcttgtggaaaac
aatgtgagatgcattatgggagaaaacgttgtatatgagcgacgaaaacagttatcagaa
tgctattatggggctgattattttcgaccaaaaagtgcccagatctgttcatgcgaaaga
gaagatttcgaatgtgattttggatatgatgttggaactgatggtactacatgtataaaa
tcagcctggtttaaagaagatcagtttcctggacctcactgtataaatgggaaatataat
cattcaaaagggtatagaaaggttgcagcaagtaaatgtaacggaggaaaggaaagtaaa
tatttacctgtagaaacagactgtcctttgttggcacccaggggcattaccatatacagt
gaaaagaaatgtatacagcgaggtgtaaatgtcacatttcgacttacccaagagtctgga
tctgcagatgagactgtttacacctggacttttggtaacgagagctctccagttactata
aaaggactacataatgccgcatctattacaacatccttcagtactatagggaaatacaat
atcactgtcctggctgtaaacagtaaagggacagcccaggctgttctacctatacatgtt
gaagagggtttgaaaggagtgctggttgagataccatggggagcacggacaggcatgccc
agttattttaatgttacagtccttggctcagataatatcacaaaacttggaaaagagcaa
tcccttcactttgcatggcacttcgaaaacaagatgacaggagatattaggcagcttaca
tggcagaatgttatacaacaagagttcaatgaacctggagaatacaaacttacactaaat
gtattcaactctgtcagctctgtattctatacacagtctgtggaggtgtatgatgacatg
acaactgtgcgtttacatttttcggaagagataaacaactataacagtagtagcctcaat
gtaagacaagcacttgcggaaatactttgccataatctagcacagattttggagataaga
agatcacgtataattatgtctgtgccaccgacacagcctgttgttggagatttgacagtg
cttccaccaaaaagggacatcaatgaaacagaaacttatcaggttgtagaaatgctgata
gatcaagcaaagcaacaatacctggcattcccattgttcactagtgatgatattgttata
ataacagatgccggaatactcgacttgcggactggagcagaatcatccaccataccacca
ccccctgcaacagtcacagtgatggtaccagtccatgtaaatgtaaccacagtgcaagaa
aaacacagtctggttgcagtgtatatatcagtgccagtccttatttctgttataggttta
gcagtagcaattatattttattatagaaaaaaattaaagtcacacaagaagtattaccca
attgtgaaacacaggtcacgtattcaccacgactcgacgtgttcatgtggggaggaggat
atattgggtctggaagatccagacgacagtataatacccgacagtgaatatcctgataac
cagccaacactgatgatactaaatgagcctcggtccagtcggactgagagatcccccgat
agagtcggacttgtaaattgttga
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